RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 PPP1R9AQ9ULJ8 1098 aa9.39□□□□□ -0.91
HPS4-209ENST00000466781 MINPP1Q9UNW1 487 aa9.39□□□□□ -0.91
HPS4-209ENST00000466781 PTPRUQ92729 1446 aa9.39□□□□□ -0.91
HPS4-209ENST00000466781 PPP1R12AO14974 1030 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 IGSF3O75054 1194 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 COPB1P53618 953 aaKnown RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 TMED2Q15363 201 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 ZNF589Q86UQ0 364 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 MARCH10Q8NA82 808 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 MAGOHBQ96A72 148 aaKnown RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 PPWD1Q96BP3 646 aaKnown RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 DESI2Q9BSY9 194 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 PIDD1Q9HB75 910 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 CD58P19256 250 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 SLC15A2Q16348 729 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 PDXDC2PQ6P474 469 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 SZRD1Q7Z422 152 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 FOXP4Q8IVH2 680 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 CALN1Q9BXU9 219 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 THEGQ9P2T0 379 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 MID2Q9UJV3 735 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 PPP2R2CQ9Y2T4 447 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 DENND3A2RUS2 1198 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 SRGAP2CP0DJJ0 459 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 CMA1P23946 247 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 ARHGDIAP52565 204 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 NLRP4Q96MN2 994 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 GPBP1L1Q9HC44 474 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 ZNF212Q9UDV6 495 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 SERPINB13Q9UIV8 391 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 HPCAL4Q9UM19 191 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 CLIC2O15247 247 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 COBLO75128 1261 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 TOM1L1O75674 476 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 ECEL1O95672 775 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 ATP1A2P50993 1020 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 KIAA1755Q5JYT7 1200 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 ZBTB41Q5SVQ8 909 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 SPATS2Q86XZ4 545 aaKnown RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 COA7Q96BR5 231 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 CLIC6Q96NY7 704 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 EFHD1Q9BUP0 239 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 TRIM15Q9C019 465 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 ZBBXA8MT70 800 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 CACNB3P54284 484 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 NSUN2Q08J23 767 aaKnown RBP eCLIP9.38□□□□□ -0.91
HPS4-209ENST00000466781 RBM46Q8TBY0 533 aaKnown RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 GIPC2Q8TF65 315 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 CCDC138Q96M89 665 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 MSTO1Q9BUK6 570 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 HAUS4Q9H6D7 363 aa9.38□□□□□ -0.91
HPS4-209ENST00000466781 UBE2TQ9NPD8 197 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 FAF1Q9UNN5 650 aaPredicted RBP9.38□□□□□ -0.91
HPS4-209ENST00000466781 NRXN1Q9ULB1 1477 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 ADD1P35611 737 aaKnown RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 EHHADHQ08426 723 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 DRP2Q13474 957 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 BZW1Q7L1Q6 419 aaKnown RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 OR6B3Q8NGW1 331 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 HSPH1Q92598 858 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 EXT2Q93063 718 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 IFT43Q96FT9 208 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 CAPS2Q9BXY5 557 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 PUS7LQ9H0K6 701 aaKnown RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 FAM49AQ9H0Q0 323 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 DONSONQ9NYP3 566 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 CPDO75976 1380 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 FAM95CA0A1B0GW59 222 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 MEIS1O00470 390 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 LRRN2O75325 713 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TAC1P20366 129 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 DDIT3P35638 169 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TSPY1Q01534 308 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 PTK2BQ14289 1009 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 SLFNL1Q499Z3 407 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 ATG16L1Q676U5 607 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 ZBTB18Q99592 522 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 NEMP1O14524 444 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 NNMTP40261 264 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TRAPPC10P48553 1259 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 APBA1Q02410 837 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 CACNB1Q02641 598 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 ALCAMQ13740 583 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 ZNF827Q17R98 1081 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 STYK1Q6J9G0 422 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 CATSPER4Q7RTX7 472 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 STAG1Q8WVM7 1258 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 PIGSQ96S52 555 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 WRNIP1Q96S55 665 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 NEUROG2Q9H2A3 272 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TRIM45Q9H8W5 580 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 TMCC1O94876 653 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 ZMYM1Q5SVZ6 1142 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 USP17L2Q6R6M4 530 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 SH3RF3Q8TEJ3 882 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 EIF2AQ9BY44 585 aaKnown RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 SCHIP1Q9P0W5 487 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 GCNT4Q9P109 453 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 SUFUQ9UMX1 484 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 INPP5FQ9Y2H2 1132 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms