RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 COASYQ13057 564 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 MFSD10Q14728 455 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 ME3Q16798 604 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 LY6KQ17RY6 165 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 KIAA0753Q2KHM9 967 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 KCNV1Q6PIU1 500 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 CPLX2Q6PUV4 134 aaKnown RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 VSIG10LQ86VR7 867 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 ADSSL1Q8N142 457 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 ZNF713Q8N859 430 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 NKD2Q969F2 451 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 PDCD2LQ9BRP1 358 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 IFIH1Q9BYX4 1025 aaKnown RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 CLEC1BQ9P126 229 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 DDX41Q9UJV9 622 aaKnown RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 LIMCH1Q9UPQ0 1083 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 V9GY48 417 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 WDR87Q6ZQQ6 2873 aa13.62□□□□□ -0.23
SQSTM1-206ENST00000466342 DMXL1Q9Y485 3027 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 MMP1P03956 469 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 LINC00271P0C7V0 271 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 TGFB3P10600 412 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 HOXA13P31271 388 aaPredicted RBP13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 THPOP40225 353 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 PFKFB3Q16875 520 aaPredicted RBP13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 HEATR3Q7Z4Q2 680 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 GPKOWQ92917 476 aaPredicted RBP eCLIP13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 PHKBQ93100 1093 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 GTF3C6Q969F1 213 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 PPP2R3CQ969Q6 453 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 RPGRIP1Q96KN7 1286 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 MRVI1Q9Y6F6 885 aa13.61□□□□□ -0.23
SQSTM1-206ENST00000466342 KIAA1671Q9BY89 1806 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 CDKL5O76039 1030 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 PDGFBP01127 241 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 MYCLP12524 364 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 SCG2P13521 617 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 AKAP17AQ02040 695 aaKnown RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 SSRP1Q08945 709 aaKnown RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 LAMC2Q13753 1193 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 CAMK1Q14012 370 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 HIC1Q14526 733 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 PGM5Q15124 567 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 PTPN21Q16825 1174 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 WWC2Q6AWC2 1192 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 SERINC5Q86VE9 423 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 DHX37Q8IY37 1157 aaKnown RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 TRIM22Q8IYM9 498 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 EFHBQ8N7U6 833 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 NECAB1Q8N987 351 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 CLP1Q92989 425 aaKnown RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 EMID1Q96A84 441 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 ZSCAN31Q96LW9 406 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 SLC26A6Q9BXS9 759 aa13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 USP15Q9Y4E8 981 aaPredicted RBP13.6□□□□□ -0.23
SQSTM1-206ENST00000466342 KAT6AQ92794 2004 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 MED19A0JLT2 244 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 RGS20O76081 388 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 F2P00734 622 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 CCND2P30279 289 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 MCTP2Q6DN12 878 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 PPP1R18Q6NYC8 613 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 FRMD5Q7Z6J6 570 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 FCHSD1Q86WN1 690 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 APBB2Q92870 758 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 PLVAPQ9BX97 442 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 SH2B1Q9NRF2 756 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 BARHL2Q9NY43 387 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 KMT2BQ9UMN6 2715 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 STK36Q9NRP7 1315 aa13.59□□□□□ -0.23
SQSTM1-206ENST00000466342 ZNF292O60281 2723 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 TTC3P53804 2025 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 PPFIA3O75145 1194 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 STAM2O75886 525 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 DEXIO95424 95 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 CTDNEP1O95476 244 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 ATF7P17544 494 aaPredicted RBP13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 MCM2P49736 904 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 NAPAP54920 295 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 ST3GAL1Q11201 340 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 TYW1BQ6NUM6 668 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 CUL5Q93034 780 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 OSBPL7Q9BZF2 842 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 PLAGL2Q9UPG8 496 aa13.58□□□□□ -0.24
SQSTM1-206ENST00000466342 PLXNA4Q9HCM2 1894 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 PIK3CDO00329 1044 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 MEIS2O14770 477 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 PPFIA4O75335 1185 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 CSPG5O95196 566 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 CD2BP2O95400 341 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 ZNF286BP0CG31 522 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 CELF3Q5SZQ8 465 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 MYSM1Q5VVJ2 828 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 XRRA1Q6P2D8 792 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 ADGRD2Q7Z7M1 963 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 TEX2Q8IWB9 1127 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 TMEM105Q8N8V8 129 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 IL31RAQ8NI17 732 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 PPTC7Q8NI37 304 aa13.57□□□□□ -0.24
SQSTM1-206ENST00000466342 P2RX5Q93086 422 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms