RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 EIF2S3P41091 472 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 PSEN2P49810 448 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 CACNB1Q02641 598 aaPredicted RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 NFATC3Q12968 1075 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 FZD5Q13467 585 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 CNGB1Q14028 1251 aaPredicted RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 GIT2Q14161 759 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 MFSD10Q14728 455 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 DGKDQ16760 1214 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 KIAA0753Q2KHM9 967 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 LRRC24Q50LG9 513 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 BEND3Q5T5X7 828 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 HIST2H2BCQ6DN03 193 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 PDXDC1Q6P996 788 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 CYP26C1Q6V0L0 522 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 TMEM179Q6ZVK1 233 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 MTSS1LQ765P7 747 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 PIP4P1Q86T03 277 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 TTC6Q86TZ1 520 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 LRRC47Q8N1G4 583 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 FAM26EQ8N5C1 309 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 PDCD7Q8N8D1 485 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 PRPF38AQ8NAV1 312 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 COLGALT1Q8NBJ5 622 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 SCFD2Q8WU76 684 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 ZC3H10Q96K80 434 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 MPHOSPH6Q99547 160 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 SLF1Q9BQI6 1058 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 LMAN1LQ9HAT1 526 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 MKNK2Q9HBH9 465 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 RAVER2Q9HCJ3 691 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 GOPCQ9HD26 462 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 WDR6Q9NNW5 1121 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 TMX2Q9Y320 296 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 PCDHB9Q9Y5E1 797 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 ZFP37Q9Y6Q3 630 aaPredicted RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 SCN5AQ14524 2016 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 TANC1Q9C0D5 1861 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 NRCAMQ92823 1304 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 FANCMQ8IYD8 2048 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 CCDC163A0A0D9SF12 145 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 CCDC194A0A1B0GVG4 234 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 RBM47A0AV96 593 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 BCLAF3A2AJT9 711 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 TBKBP1A7MCY6 615 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 E9PAM4 449 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 RBAK-RBAKDNI3L0D1 243 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 K7ESF4 209 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ZMYND10O75800 440 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 CXCL14O95715 111 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 FTH1P19P0C7X4 201 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 TXNP10599 105 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 GHRP10912 638 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 BMP3P12645 472 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 PDE4AP27815 886 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 MAPK8P45983 427 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ATXN3P54252 364 aaPredicted RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 OAZ1P54368 228 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ICA1Q05084 483 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 SEMA3BQ13214 749 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 SEMA3FQ13275 785 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 TRIP6Q15654 476 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 CCDC27Q2M243 656 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 PREPLQ4J6C6 727 aaPredicted RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 PKDCCQ504Y2 493 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 FAM83BQ5T0W9 1011 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ZNF746Q6NUN9 644 aaPredicted RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 GET4Q7L5D6 327 aaPredicted RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 TICAM1Q8IUC6 712 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 SRRM1Q8IYB3 904 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 GALNT15Q8N3T1 639 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 MORC4Q8TE76 937 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 KAT2BQ92831 832 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ATP6V0A1Q93050 837 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 PHKBQ93100 1093 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 NSUN4Q96CB9 384 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 PLEKHF1Q96S99 279 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 PI4K2AQ9BTU6 479 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 NUSAP1Q9BXS6 441 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 STK31Q9BXU1 1019 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 FTHL17Q9BXU8 183 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 POLMQ9NP87 494 aaPredicted RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 A1CFQ9NQ94 594 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 AATFQ9NY61 560 aaKnown RBP eCLIP3.17□□□□□ -1.9
USP40-211ENST00000464956 SPG21Q9NZD8 308 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 RAI14Q9P0K7 980 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 ADD3Q9UEY8 706 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 DPP7Q9UHL4 492 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 FBN2P35556 2912 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 SMCHD1A6NHR9 2005 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 PDS5AQ29RF7 1337 aaKnown RBP3.17□□□□□ -1.9
USP40-211ENST00000464956 CREBBPQ92793 2442 aa3.17□□□□□ -1.9
USP40-211ENST00000464956 SPEF2Q9C093 1822 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 NID2Q14112 1375 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 CEP295Q9C0D2 2601 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 LOC102724159A0A0B4J2E5 919 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 C17orf102A2RUQ5 167 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 CLEC18AA5D8T8 446 aa3.16□□□□□ -1.9
USP40-211ENST00000464956 BHMG1C9JSJ3 638 aaPredicted RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms