RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TMEM62Q0P6H9 643 aa17.52■□□□□ 0.4
SKA3-204ENST00000462482 MIS18BP1Q6P0N0 1132 aa17.52■□□□□ 0.4
SKA3-204ENST00000462482 CENPQQ7L2Z9 268 aaPredicted RBP17.52■□□□□ 0.4
SKA3-204ENST00000462482 NIPA1Q7RTP0 329 aa17.52■□□□□ 0.4
SKA3-204ENST00000462482 CMTR2Q8IYT2 770 aaKnown RBP17.52■□□□□ 0.4
SKA3-204ENST00000462482 CCDC12Q8WUD4 166 aaPredicted RBP17.52■□□□□ 0.4
SKA3-204ENST00000462482 CLP1Q92989 425 aaKnown RBP17.52■□□□□ 0.4
SKA3-204ENST00000462482 TCEANC2Q96MN5 208 aa17.52■□□□□ 0.4
SKA3-204ENST00000462482 AGO3Q9H9G7 860 aaKnown RBP17.52■□□□□ 0.4
SKA3-204ENST00000462482 BRPF3Q9ULD4 1205 aa17.52■□□□□ 0.4
SKA3-204ENST00000462482 PADI3Q9ULW8 664 aa17.52■□□□□ 0.4
SKA3-204ENST00000462482 PTPRSQ13332 1948 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 DDX39AO00148 427 aaKnown RBP17.51■□□□□ 0.39
SKA3-204ENST00000462482 MEIS1O00470 390 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 GRM6O15303 877 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 HBP1O60381 514 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 CDC45O75419 566 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 SCG2P13521 617 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 ITGB3BPQ13352 177 aaPredicted RBP17.51■□□□□ 0.39
SKA3-204ENST00000462482 CSPP1Q1MSJ5 1256 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 TSGA10IPQ3SY00 556 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 NAALADL2Q58DX5 795 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 MTHFD1LQ6UB35 978 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 PLA2G4DQ86XP0 818 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 CKAP2LQ8IYA6 745 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 TRAPPC12Q8WVT3 735 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 ZNF689Q96CS4 500 aaPredicted RBP17.51■□□□□ 0.39
SKA3-204ENST00000462482 ZBTB10Q96DT7 871 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 C6orf50Q9HD87 102 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 CD320Q9NPF0 282 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 PRKAG3Q9UGI9 489 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 GINS2Q9Y248 185 aa17.51■□□□□ 0.39
SKA3-204ENST00000462482 ARIH1Q9Y4X5 557 aaPredicted RBP17.51■□□□□ 0.39
SKA3-204ENST00000462482 IGSF9BQ9UPX0 1349 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 IBSPP21815 317 aaPredicted RBP17.5■□□□□ 0.39
SKA3-204ENST00000462482 METAP2P50579 478 aaKnown RBP eCLIP17.5■□□□□ 0.39
SKA3-204ENST00000462482 AKAP17AQ02040 695 aaKnown RBP17.5■□□□□ 0.39
SKA3-204ENST00000462482 NFX1Q12986 1120 aaKnown RBP17.5■□□□□ 0.39
SKA3-204ENST00000462482 JAKMIP3Q5VZ66 844 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 TYW1BQ6NUM6 668 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 PDXDC2PQ6P474 469 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 ATP8B4Q8TF62 1192 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 P2RX5Q93086 422 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 UPF3BQ9BZI7 483 aaKnown RBP17.5■□□□□ 0.39
SKA3-204ENST00000462482 IGFLR1Q9H665 355 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 RC3H2Q9HBD1 1191 aaKnown RBP17.5■□□□□ 0.39
SKA3-204ENST00000462482 ZNF302Q9NR11 478 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 TMEM260Q9NX78 707 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 NCOR1O75376 2440 aa17.5■□□□□ 0.39
SKA3-204ENST00000462482 TCF20Q9UGU0 1960 aaKnown RBP17.49■□□□□ 0.39
SKA3-204ENST00000462482 FAM86C2PA6NEL3 165 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 CSPG5O95196 566 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 ATG7O95352 703 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 MMP1P03956 469 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 KLRC1P26715 233 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 FUT2Q10981 343 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 COL19A1Q14993 1142 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 PAN2Q504Q3 1202 aaKnown RBP17.49■□□□□ 0.39
SKA3-204ENST00000462482 ZNF484Q5JVG2 852 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 TBC1D22BQ9NU19 505 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 PCDHB7Q9Y5E2 793 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 MRPL42Q9Y6G3 142 aaKnown RBP17.49■□□□□ 0.39
SKA3-204ENST00000462482 MUC3AQ02505 3323 aa17.49■□□□□ 0.39
SKA3-204ENST00000462482 KDM3AQ9Y4C1 1321 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 DENND3A2RUS2 1198 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 IPO5O00410 1097 aaKnown RBP17.48■□□□□ 0.39
SKA3-204ENST00000462482 RPS6KA5O75582 802 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 GNA11P29992 359 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 SETQ01105 290 aaPredicted RBP17.48■□□□□ 0.39
SKA3-204ENST00000462482 HYAL1Q12794 435 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 PFKFB3Q16875 520 aaPredicted RBP17.48■□□□□ 0.39
SKA3-204ENST00000462482 ADCK5Q3MIX3 580 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 SPOUT1Q5T280 376 aaKnown RBP17.48■□□□□ 0.39
SKA3-204ENST00000462482 SWSAP1Q6NVH7 229 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 ABHD15Q6UXT9 468 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 RASEFQ8IZ41 740 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 LINC01599Q8WXQ3 324 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 KHSRPQ92945 711 aaKnown RBP eCLIP17.48■□□□□ 0.39
SKA3-204ENST00000462482 POP1Q99575 1024 aaKnown RBP17.48■□□□□ 0.39
SKA3-204ENST00000462482 ZNF577Q9BSK1 485 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 ALG13Q9NP73 1137 aaKnown RBP17.48■□□□□ 0.39
SKA3-204ENST00000462482 AAASQ9NRG9 546 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 PLAGL2Q9UPG8 496 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 SIP14410 1827 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 COL1A2P08123 1366 aa17.48■□□□□ 0.39
SKA3-204ENST00000462482 XIRP2A4UGR9 3374 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 IGKV6D-21A0A0A0MT36 114 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 GPR182O15218 404 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 CCNE2O96020 404 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 CYP3A4P08684 503 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 CDC27P30260 824 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 ADD1P35611 737 aaKnown RBP17.47■□□□□ 0.39
SKA3-204ENST00000462482 SARSP49591 514 aaKnown RBP17.47■□□□□ 0.39
SKA3-204ENST00000462482 CLK2P49760 499 aaKnown RBP17.47■□□□□ 0.39
SKA3-204ENST00000462482 NDUFV1P49821 464 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 RTN4RL1Q86UN2 441 aaPredicted RBP17.47■□□□□ 0.39
SKA3-204ENST00000462482 ADHFE1Q8IWW8 467 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 REXO1Q8N1G1 1221 aaKnown RBP17.47■□□□□ 0.39
SKA3-204ENST00000462482 BICD2Q8TD16 824 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 UIMC1Q96RL1 719 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms