RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 ODR4Q5SWX8 454 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 ZNF772Q68DY9 489 aaPredicted RBP16.86■□□□□ 0.29
LMNB1-203ENST00000460265 PPP1R18Q6NYC8 613 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 DEFB132Q7Z7B7 95 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 FAM178BQ8IXR5 827 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 PACSIN2Q9UNF0 486 aaPredicted RBP16.86■□□□□ 0.29
LMNB1-203ENST00000460265 BTAF1O14981 1849 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 ONECUT3O60422 494 aaPredicted RBP16.86■□□□□ 0.29
LMNB1-203ENST00000460265 MYBP10242 640 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 NMT1P30419 496 aaKnown RBP16.86■□□□□ 0.29
LMNB1-203ENST00000460265 ARHGAP25P42331 645 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 EHHADHQ08426 723 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 EIF2AK1Q9BQI3 630 aaKnown RBP16.86■□□□□ 0.29
LMNB1-203ENST00000460265 PCIF1Q9H4Z3 704 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 BCAS3Q9H6U6 928 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 EHMT1Q9H9B1 1298 aa16.86■□□□□ 0.29
LMNB1-203ENST00000460265 CCDC88AQ3V6T2 1871 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 VAV2P52735 878 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 PRAMEF18Q5VWM3 479 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 CCDC170Q8IYT3 715 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 NOX5Q96PH1 765 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 EHD2Q9NZN4 543 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 REXO2Q9Y3B8 237 aaKnown RBP16.85■□□□□ 0.29
LMNB1-203ENST00000460265 MYO1FO00160 1098 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 MEIS2O14770 477 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 MSH4O15457 936 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 EXOC3O60645 756 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 EXOC3L4Q17RC7 722 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 ZC2HC1CQ53FD0 456 aaPredicted RBP16.85■□□□□ 0.29
LMNB1-203ENST00000460265 TTC19Q6DKK2 380 aaPredicted RBP16.85■□□□□ 0.29
LMNB1-203ENST00000460265 NFRKBQ6P4R8 1299 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 CEP57Q86XR8 500 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 MSANTD4Q8NCY6 345 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 DNAJC7Q99615 494 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 CD248Q9HCU0 757 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 SERPINA10Q9UK55 444 aa16.85■□□□□ 0.29
LMNB1-203ENST00000460265 FLOT1O75955 427 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 ZBTB7AO95365 584 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 SNHG28P0DPA3 235 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 AP3B2Q13367 1082 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 MIIPQ5JXC2 388 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 VPS36Q86VN1 386 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 TRIM58Q8NG06 486 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 SGSM3Q96HU1 749 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 TSGA10Q9BZW7 698 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 IKZF4Q9H2S9 585 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 ARHGAP20Q9P2F6 1191 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 MYO1AQ9UBC5 1043 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 ODF2LQ9ULJ1 636 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 MYH8P13535 1937 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 TESPA1A2RU30 521 aaPredicted RBP16.84■□□□□ 0.29
LMNB1-203ENST00000460265 CALUO43852 315 aaPredicted RBP16.84■□□□□ 0.29
LMNB1-203ENST00000460265 ABCB11O95342 1321 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 ABCB4P21439 1286 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 JAG1P78504 1218 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 HLTFQ14527 1009 aaKnown RBP eCLIP16.84■□□□□ 0.29
LMNB1-203ENST00000460265 UTRNP46939 3433 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 TIAM2Q8IVF5 1701 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 EIF2AK2P19525 551 aaKnown RBP16.84■□□□□ 0.29
LMNB1-203ENST00000460265 SLC9A1P19634 815 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 CASP5P51878 434 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 MAP2K1Q02750 393 aaPredicted RBP16.84■□□□□ 0.29
LMNB1-203ENST00000460265 KCNA1Q09470 495 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 MAP9Q49MG5 647 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 MIEF2Q96C03 454 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 GLIS2Q9BZE0 524 aaPredicted RBP16.84■□□□□ 0.29
LMNB1-203ENST00000460265 LTBP4Q8N2S1 1624 aa16.84■□□□□ 0.29
LMNB1-203ENST00000460265 GOLGA6CA6NDK9 693 aa16.83■□□□□ 0.29
LMNB1-203ENST00000460265 GOLGA6DP0CG33 693 aa16.83■□□□□ 0.29
LMNB1-203ENST00000460265 TUBB4BP68371 445 aa16.83■□□□□ 0.29
LMNB1-203ENST00000460265 KCTD19Q17RG1 926 aaPredicted RBP16.83■□□□□ 0.29
LMNB1-203ENST00000460265 GOLGA6AQ9NYA3 693 aa16.83■□□□□ 0.29
LMNB1-203ENST00000460265 ZNF70Q9UC06 446 aaPredicted RBP16.83■□□□□ 0.29
LMNB1-203ENST00000460265 MRPL11Q9Y3B7 192 aaKnown RBP16.83■□□□□ 0.29
LMNB1-203ENST00000460265 DOCK2Q92608 1830 aa16.83■□□□□ 0.29
LMNB1-203ENST00000460265 ORC2Q13416 577 aaPredicted RBP16.83■□□□□ 0.28
LMNB1-203ENST00000460265 NAIF1Q69YI7 327 aaPredicted RBP16.83■□□□□ 0.28
LMNB1-203ENST00000460265 KLHL7Q8IXQ5 586 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 SCFD1Q8WVM8 642 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 AGBL1Q96MI9 1066 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 FRMD3A2A2Y4 597 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 CCDC169A6NNP5 214 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 ERGIC2Q96RQ1 377 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 GOLPH3Q9H4A6 298 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 CAPN6Q9Y6Q1 641 aa16.83■□□□□ 0.28
LMNB1-203ENST00000460265 TUBBP07437 444 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 IRAK1P51617 712 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 SLC15A2Q16348 729 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 NBPF9Q3BBW0 867 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 RNF187Q5TA31 235 aaPredicted RBP16.82■□□□□ 0.28
LMNB1-203ENST00000460265 MIER3Q7Z3K6 550 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 DNAJC19Q96DA6 116 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 EHD4Q9H223 541 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 RAVER2Q9HCJ3 691 aaKnown RBP16.82■□□□□ 0.28
LMNB1-203ENST00000460265 FRMD4BQ9Y2L6 1034 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 EML1O00423 815 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 PAX7P23759 505 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 CDR1P51861 262 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 TUBB2AQ13885 445 aa16.82■□□□□ 0.28
LMNB1-203ENST00000460265 KNOP1Q1ED39 458 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms