RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 MYL1P05976 194 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 YWHABP31946 246 aaKnown RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 GJA8P48165 433 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 CYP4A11Q02928 519 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 PTPN11Q06124 597 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 CTTNQ14247 550 aaKnown RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 MTFR1Q15390 333 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 KCNA10Q16322 511 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 SHC4Q6S5L8 630 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 SV2BQ7L1I2 683 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 CCDC60Q8IWA6 550 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 ZNF710Q8N1W2 664 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 C7orf31Q8N865 590 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 RETREG2Q8NC44 543 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 BANK1Q8NDB2 785 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 CCDC47Q96A33 483 aaKnown RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 SYAP1Q96A49 352 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 EPSTI1Q96J88 318 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 TIPINQ9BVW5 301 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 CRISPLD2Q9H0B8 497 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 DDX19AQ9NUU7 478 aaKnown RBP13.78□□□□□ -0.2
HDAC4-206ENST00000460235 RGL1Q9NZL6 768 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 IGSF9BQ9UPX0 1349 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 COL1A2P08123 1366 aa13.78□□□□□ -0.2
HDAC4-206ENST00000460235 ARHGEF35A5YM69 484 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 POLR2DO15514 142 aaKnown RBP13.77□□□□□ -0.21
HDAC4-206ENST00000460235 ADCY6O43306 1168 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 EYA4O95677 639 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 ASGR1P07306 291 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 SPATA31C1P0DKV0 1188 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 PFKFB1P16118 471 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 RFC5P40937 340 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 PSEN2P49810 448 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 DNM2P50570 870 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 ACLYP53396 1101 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 PURAQ00577 322 aaKnown RBP13.77□□□□□ -0.21
HDAC4-206ENST00000460235 BEX3Q00994 111 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 PRKCEQ02156 737 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 MFSD10Q14728 455 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 NFRKBQ6P4R8 1299 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 NRCAMQ92823 1304 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 TIGD1Q96MW7 591 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 C16orf70Q9BSU1 422 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 NIFKQ9BYG3 293 aaKnown RBP13.77□□□□□ -0.21
HDAC4-206ENST00000460235 PHF24Q9UPV7 400 aa13.77□□□□□ -0.21
HDAC4-206ENST00000460235 MROH7Q68CQ1 1323 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 A0A1B0GVL5 298 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 MED24O75448 989 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 MYCP01106 439 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-206ENST00000460235 SLFN14P0C7P3 912 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 PLCG1P19174 1290 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 TMOD1P28289 359 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 CDC25AP30304 524 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 CDC42EP1Q00587 391 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 GRIN1Q05586 938 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 KARSQ15046 597 aaKnown RBP13.76□□□□□ -0.21
HDAC4-206ENST00000460235 KIAA0753Q2KHM9 967 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 TMEM119Q4V9L6 283 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 XKR9Q5GH70 373 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 SPECC1Q5M775 1068 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 CNNM3Q8NE01 707 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 SLC7A3Q8WY07 619 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 LARP4BQ92615 738 aaKnown RBP13.76□□□□□ -0.21
HDAC4-206ENST00000460235 LENG1Q96BZ8 264 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-206ENST00000460235 CEP170P1Q96L14 293 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 GTPBP4Q9BZE4 634 aaKnown RBP13.76□□□□□ -0.21
HDAC4-206ENST00000460235 BCAS3Q9H6U6 928 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 STARD7Q9NQZ5 370 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 SEPT9Q9UHD8 586 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-206ENST00000460235 TCHHQ07283 1943 aa13.76□□□□□ -0.21
HDAC4-206ENST00000460235 A0A0U1RQG5 324 aaPredicted RBP13.75□□□□□ -0.21
HDAC4-206ENST00000460235 POTEFA5A3E0 1075 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 PP2D1A8MPX8 630 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 DGAT1O75907 488 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 ZNF202O95125 648 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 KRT18P05783 430 aaKnown RBP13.75□□□□□ -0.21
HDAC4-206ENST00000460235 ZNF286BP0CG31 522 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 TBC1D8BQ0IIM8 1120 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 PPFIA1Q13136 1202 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 GRB10Q13322 594 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 PLCB4Q15147 1175 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 TMEM63BQ5T3F8 832 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 POTEGQ6S5H5 508 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 CXCL17Q6UXB2 119 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 ELOA2Q8IYF1 753 aaPredicted RBP13.75□□□□□ -0.21
HDAC4-206ENST00000460235 PDILTQ8N807 584 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 MCPH1Q8NEM0 835 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 TCP11Q8WWU5 503 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 RAD54LQ92698 747 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 DHX58Q96C10 678 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 CHAMP1Q96JM3 812 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 MMTAG2Q9BU76 263 aaKnown RBP13.75□□□□□ -0.21
HDAC4-206ENST00000460235 TNMDQ9H2S6 317 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 CYP26B1Q9NR63 512 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 LMBRD1Q9NUN5 540 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 HPSEQ9Y251 543 aa13.75□□□□□ -0.21
HDAC4-206ENST00000460235 C17orf102A2RUQ5 167 aa13.74□□□□□ -0.21
HDAC4-206ENST00000460235 HAS3O00219 553 aa13.74□□□□□ -0.21
HDAC4-206ENST00000460235 CTAGE5O15320 804 aa13.74□□□□□ -0.21
HDAC4-206ENST00000460235 SSBP05455 408 aaKnown RBP eCLIP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms