RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NTRK3Q16288 839 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 EPC2Q52LR7 807 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 FAM160B1Q5W0V3 765 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 POTEBQ6S5H4 581 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 PHKBQ93100 1093 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 TRPV2Q9Y5S1 764 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 TTC3P53804 2025 aa25.9■■□□□ 1.74
PTPN4-207ENST00000460162 DDX39AO00148 427 aaKnown RBP25.89■■□□□ 1.74
PTPN4-207ENST00000460162 IPO5O00410 1097 aaKnown RBP25.89■■□□□ 1.74
PTPN4-207ENST00000460162 ABHD15Q6UXT9 468 aa25.89■■□□□ 1.74
PTPN4-207ENST00000460162 BICD2Q8TD16 824 aa25.89■■□□□ 1.74
PTPN4-207ENST00000460162 TRAPPC12Q8WVT3 735 aa25.89■■□□□ 1.74
PTPN4-207ENST00000460162 ZBTB10Q96DT7 871 aa25.89■■□□□ 1.74
PTPN4-207ENST00000460162 COL1A2P08123 1366 aa25.89■■□□□ 1.74
PTPN4-207ENST00000460162 MYH9P35579 1960 aaKnown RBP25.88■■□□□ 1.73
PTPN4-207ENST00000460162 SMIM35A0A1B0GVV1 85 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 BACH1O14867 736 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 DHX15O43143 795 aaKnown RBP25.88■■□□□ 1.73
PTPN4-207ENST00000460162 IFNAR1P17181 557 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 PTPROQ16827 1216 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 MIS18BP1Q6P0N0 1132 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 CCDC60Q8IWA6 550 aaPredicted RBP25.88■■□□□ 1.73
PTPN4-207ENST00000460162 ATP8B4Q8TF62 1192 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 RC3H2Q9HBD1 1191 aaKnown RBP25.88■■□□□ 1.73
PTPN4-207ENST00000460162 ADGRA3Q8IWK6 1321 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 KDM3AQ9Y4C1 1321 aa25.88■■□□□ 1.73
PTPN4-207ENST00000460162 HBP1O60381 514 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 MTHFD1LQ6UB35 978 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 RUFY3Q7L099 469 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 TMEM192Q8IY95 271 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 MRPL38Q96DV4 380 aaKnown RBP25.87■■□□□ 1.73
PTPN4-207ENST00000460162 IL17RAQ96F46 866 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 ZNF577Q9BSK1 485 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 FTHL17Q9BXU8 183 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 AGO3Q9H9G7 860 aaKnown RBP25.87■■□□□ 1.73
PTPN4-207ENST00000460162 ZNF302Q9NR11 478 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 TBC1D22BQ9NU19 505 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 IGSF9BQ9UPX0 1349 aa25.87■■□□□ 1.73
PTPN4-207ENST00000460162 H3BNC9 293 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 ADAMTS3O15072 1205 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 PDIA3P30101 505 aaKnown RBP25.86■■□□□ 1.73
PTPN4-207ENST00000460162 TIGD5Q53EQ6 642 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 ZNF746Q6NUN9 644 aaPredicted RBP25.86■■□□□ 1.73
PTPN4-207ENST00000460162 SMAP1Q8IYB5 467 aaPredicted RBP25.86■■□□□ 1.73
PTPN4-207ENST00000460162 NME8Q8N427 588 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 FIBCD1Q8N539 461 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 SLC26A6Q9BXS9 759 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 TCEAL9Q9UHQ7 104 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 RWDD3Q9Y3V2 267 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 WDR81Q562E7 1941 aa25.86■■□□□ 1.73
PTPN4-207ENST00000460162 ATG2AQ2TAZ0 1938 aa25.85■■□□□ 1.73
PTPN4-207ENST00000460162 ENPP3O14638 875 aa25.85■■□□□ 1.73
PTPN4-207ENST00000460162 CD52P31358 61 aa25.85■■□□□ 1.73
PTPN4-207ENST00000460162 CIITAP33076 1130 aa25.85■■□□□ 1.73
PTPN4-207ENST00000460162 PDXDC2PQ6P474 469 aa25.85■■□□□ 1.73
PTPN4-207ENST00000460162 CELF4Q9BZC1 486 aaKnown RBP25.85■■□□□ 1.73
PTPN4-207ENST00000460162 ZSWIM6Q9HCJ5 1215 aa25.85■■□□□ 1.73
PTPN4-207ENST00000460162 KRT76Q01546 638 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 TMEM62Q0P6H9 643 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 PAK2Q13177 524 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 GPM6BQ13491 265 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 TOB2Q14106 344 aaPredicted RBP25.84■■□□□ 1.73
PTPN4-207ENST00000460162 FAM43BQ6ZT52 329 aaPredicted RBP25.84■■□□□ 1.73
PTPN4-207ENST00000460162 RASGRP4Q8TDF6 673 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 LINC01599Q8WXQ3 324 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 NECAB3Q96P71 396 aaPredicted RBP25.84■■□□□ 1.73
PTPN4-207ENST00000460162 NCOA5Q9HCD5 579 aaKnown RBP25.84■■□□□ 1.73
PTPN4-207ENST00000460162 SH3GLB2Q9NR46 395 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 VPS54Q9P1Q0 977 aa25.84■■□□□ 1.73
PTPN4-207ENST00000460162 C5orf67F2Z3F1 127 aa25.83■■□□□ 1.73
PTPN4-207ENST00000460162 CCT2P78371 535 aaKnown RBP25.83■■□□□ 1.73
PTPN4-207ENST00000460162 PRR16Q569H4 304 aa25.83■■□□□ 1.73
PTPN4-207ENST00000460162 ZNF484Q5JVG2 852 aa25.83■■□□□ 1.73
PTPN4-207ENST00000460162 TRIM22Q8IYM9 498 aa25.83■■□□□ 1.73
PTPN4-207ENST00000460162 ZNF689Q96CS4 500 aaPredicted RBP25.83■■□□□ 1.73
PTPN4-207ENST00000460162 UBE2ZQ9H832 354 aaPredicted RBP25.83■■□□□ 1.73
PTPN4-207ENST00000460162 CYP46A1Q9Y6A2 500 aa25.83■■□□□ 1.73
PTPN4-207ENST00000460162 KIAA1671Q9BY89 1806 aa25.83■■□□□ 1.73
PTPN4-207ENST00000460162 EVPLQ92817 2033 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 LINC00271P0C7V0 271 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 KLRC1P26715 233 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 CTNNB1P35222 781 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 SWSAP1Q6NVH7 229 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 BBXQ8WY36 941 aaPredicted RBP25.82■■□□□ 1.72
PTPN4-207ENST00000460162 LENG9Q96B70 501 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 TM6SF1Q9BZW5 370 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 PADI3Q9ULW8 664 aa25.82■■□□□ 1.72
PTPN4-207ENST00000460162 MAFBQ9Y5Q3 323 aaPredicted RBP25.82■■□□□ 1.72
PTPN4-207ENST00000460162 PPFIA3O75145 1194 aa25.81■■□□□ 1.72
PTPN4-207ENST00000460162 DGKIO75912 1065 aa25.81■■□□□ 1.72
PTPN4-207ENST00000460162 RB1P06400 928 aa25.81■■□□□ 1.72
PTPN4-207ENST00000460162 PSAPP07602 524 aa25.81■■□□□ 1.72
PTPN4-207ENST00000460162 NPAS4Q8IUM7 802 aa25.81■■□□□ 1.72
PTPN4-207ENST00000460162 CLP1Q92989 425 aaKnown RBP25.81■■□□□ 1.72
PTPN4-207ENST00000460162 C11orf84Q9BUA3 381 aaPredicted RBP25.81■■□□□ 1.72
PTPN4-207ENST00000460162 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.8■■□□□ 1.72
PTPN4-207ENST00000460162 ZBTB42B2RXF5 422 aa25.8■■□□□ 1.72
PTPN4-207ENST00000460162 NEFLP07196 543 aa25.8■■□□□ 1.72
PTPN4-207ENST00000460162 BTG3Q14201 252 aaPredicted RBP25.8■■□□□ 1.72
PTPN4-207ENST00000460162 CKAP2LQ8IYA6 745 aa25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms