RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CDC45O75419 566 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 PNLIPP16233 465 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 VIPR1P32241 457 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 ZNF76P36508 570 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 CRKP46108 304 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 EPHB1P54762 984 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 RTP1P59025 263 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 SARNPP82979 210 aaKnown RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 EIF2B5Q13144 721 aaKnown RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 SMC1AQ14683 1233 aaKnown RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 PUM3Q15397 648 aaKnown RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 PTPN14Q15678 1187 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 FILIP1LQ4L180 1135 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 COBLL1Q53SF7 1204 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 CT47A1Q5JQC4 288 aaPredicted RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 OLFML2BQ68BL8 750 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 SLC4A10Q6U841 1118 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 EP400NLQ6ZTU2 488 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 NLRC3Q7RTR2 1065 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 RASSF3Q86WH2 238 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 ARL10Q8N8L6 244 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 ANKRD42Q8N9B4 389 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 JMYQ8N9B5 988 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 MARCH10Q8NA82 808 aaPredicted RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 CCDC191Q8NCU4 936 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 PANK1Q8TE04 598 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 SERINC2Q96SA4 455 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 CNNM2Q9H8M5 875 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 NGRNQ9NPE2 291 aaKnown RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 SH3GLB2Q9NR46 395 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 CHST7Q9NS84 486 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 SMC4Q9NTJ3 1288 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 TRMT1Q9NXH9 659 aaKnown RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 LUZP4Q9P127 313 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 RABL2AQ9UBK7 228 aaPredicted RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 SEL1LQ9UBV2 794 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 PGAP2Q9UHJ9 254 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 TAGLN3Q9UI15 199 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 ZHX1Q9UKY1 873 aaPredicted RBP6.22□□□□□ -1.41
VPS41-209ENST00000457055 MINPP1Q9UNW1 487 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 TAF6LQ9Y6J9 622 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 TRAPPC8Q9Y2L5 1435 aa6.22□□□□□ -1.41
VPS41-209ENST00000457055 TMCO5BA8MYB1 307 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 N4BP3O15049 544 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 GREM1O60565 184 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 BAIAP3O94812 1187 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 NCAM1P13591 858 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 KIF22Q14807 665 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 FXNQ16595 210 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 BRDTQ58F21 947 aaPredicted RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 LRCH2Q5VUJ6 765 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 PPP4R3AQ6IN85 833 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 ERAP2Q6P179 960 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 CFAP161Q6P656 301 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 GALNT18Q6P9A2 607 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 ZNF449Q6P9G9 518 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 ZNF354CQ86Y25 554 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 CKAP2LQ8IYA6 745 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 IFNL2Q8IZJ0 200 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 ZNF296Q8WUU4 475 aaPredicted RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 ATG4CQ96DT6 458 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 UIMC1Q96RL1 719 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 MKRN2Q9H000 416 aaKnown RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 IQCGQ9H095 443 aaKnown RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 CNTD2Q9H8S5 307 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 EHMT1Q9H9B1 1298 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 C6orf203Q9P0P8 240 aaPredicted RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 TNFRSF10DQ9UBN6 386 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 PCSK1NQ9UHG2 260 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 ITM2BQ9Y287 266 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 GPR55Q9Y2T6 319 aaPredicted RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 RRP15Q9Y3B9 282 aaKnown RBP6.21□□□□□ -1.42
VPS41-209ENST00000457055 WASHC2AQ641Q2 1341 aa6.21□□□□□ -1.42
VPS41-209ENST00000457055 H0Y3Z8 333 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 MEIS1O00470 390 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 ABLIM1O14639 778 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 ALDH1L1O75891 902 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 IFIT2P09913 472 aaKnown RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 GYS1P13807 737 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 ARL4AP40617 200 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 CCNFP41002 786 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 AFF3P51826 1226 aaKnown RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 SESN3P58005 492 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 ERVFRD-1P60508 538 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 YBX1P67809 324 aaKnown RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 CCDC15Q0P6D6 951 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 HSF5Q4G112 596 aaPredicted RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 SEZ6Q53EL9 994 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 GK5Q6ZS86 529 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 C14orf80Q86SX3 495 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 MCF2L2Q86YR7 1114 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 KIAA0825Q8IV33 1275 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 SPICE1Q8N0Z3 855 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 TEX9Q8N6V9 391 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 TDRD7Q8NHU6 1098 aaKnown RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 GABPB2Q8TAK5 448 aaPredicted RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 TEX13AQ9BXU3 409 aaPredicted RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 KRTAP9-3Q9BYQ3 159 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 ABCG4Q9H172 646 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 GINM1Q9NU53 330 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms