RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 PALB2Q86YC2 1186 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SCYL3Q8IZE3 742 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 ABTB2Q8N961 1025 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 COG1Q8WTW3 980 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 INTS12Q96CB8 462 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 EGLN2Q96KS0 407 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 RIOK1Q9BRS2 568 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 FTOQ9C0B1 505 aaKnown RBP eCLIP7.04□□□□□ -1.28
MCF2-205ENST00000437564 OSBPL3Q9H4L5 887 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 BRD9Q9H8M2 597 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 C8orf4Q9NR00 106 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 YTHDC2Q9H6S0 1430 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 PARD3Q8TEW0 1356 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 WDR7Q9Y4E6 1490 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 A0A088AWK7 358 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 CCDC163A0A0D9SF12 145 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 OR5K4A6NMS3 321 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 TMCC2O75069 709 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 RGS20O76081 388 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 KRT6AP02538 564 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 KRT6BP04259 564 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 S100BP04271 92 aaPredicted RBP7.03□□□□□ -1.28
MCF2-205ENST00000437564 KRT13P13646 458 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 CALB2P22676 271 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 LSP1P33241 339 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 PCK1P35558 622 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 GALNT1Q10472 559 aaPredicted RBP7.03□□□□□ -1.28
MCF2-205ENST00000437564 DNAJC3Q13217 504 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 CUL4AQ13619 759 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 CDONQ4KMG0 1287 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 RASIP1Q5U651 963 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 CACNA2D4Q7Z3S7 1137 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 LRRTM3Q86VH5 581 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD44Q8N8A2 993 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 PPFIBP2Q8ND30 876 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 DDHD1Q8NEL9 900 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 AGAP11Q8TF27 550 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 HERVK_113Q902F9 699 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 NELL1Q92832 810 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 PGBD4Q96DM1 585 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 RRP36Q96EU6 259 aaKnown RBP7.03□□□□□ -1.28
MCF2-205ENST00000437564 OLFM3Q96PB7 478 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 CIB1Q99828 191 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 SPATA16Q9BXB7 569 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.03□□□□□ -1.28
MCF2-205ENST00000437564 FOXP3Q9BZS1 431 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 BRINP2Q9C0B6 783 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 ANO2Q9NQ90 1003 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 THAP1Q9NVV9 213 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 HSFX1Q9UBD0 423 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 VANGL2Q9ULK5 521 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 POLR3AO14802 1390 aaPredicted RBP7.03□□□□□ -1.28
MCF2-205ENST00000437564 FANCD2Q9BXW9 1451 aa7.03□□□□□ -1.28
MCF2-205ENST00000437564 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 GOLGA8IPA6NC78 632 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 SYCE1LA8MT33 242 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 TMEM114B3SHH9 223 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 GOLGA8MH3BSY2 632 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 DNM1LO00429 736 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 PPIP5K2O43314 1243 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 PYGMP11217 842 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 IL10P22301 178 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 SFPQP23246 707 aaKnown RBP eCLIP7.02□□□□□ -1.29
MCF2-205ENST00000437564 RPL9P32969 192 aaKnown RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 EVI2BP34910 448 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 KRT6CP48668 564 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 MAPKAPK2P49137 400 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 SARSP49591 514 aaKnown RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 RCAN1P53805 252 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 PPP2R2AP63151 447 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 PIP4K2BP78356 416 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 MRPS15P82914 257 aaKnown RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 ATP8B2P98198 1209 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 GPR162Q16538 588 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 PTGISQ16647 500 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 MOGQ16653 247 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 MTERF2Q49AM1 385 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 CAVIN4Q5BKX8 364 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 RNF220Q5VTB9 566 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 HIBCHQ6NVY1 386 aaPredicted RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 RBM43Q6ZSC3 357 aaKnown RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 CATSPER4Q7RTX7 472 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 RIC3Q7Z5B4 369 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 SPATA2LQ8IUW3 424 aaPredicted RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 PASD1Q8IV76 773 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 CCDC63Q8NA47 563 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 IQCDQ96DY2 449 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 HS3ST6Q96QI5 342 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 TSG101Q99816 390 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 CENPKQ9BS16 269 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 ALG1Q9BT22 464 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 KRT23Q9C075 422 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 PSTPIP2Q9H939 334 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 LGR6Q9HBX8 967 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 VTA1Q9NP79 307 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 RIC8AQ9NPQ8 531 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 C12orf4Q9NQ89 552 aa7.02□□□□□ -1.29
MCF2-205ENST00000437564 FARSBQ9NSD9 589 aaKnown RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 TTF2Q9UNY4 1162 aaKnown RBP7.02□□□□□ -1.29
MCF2-205ENST00000437564 LIMCH1Q9UPQ0 1083 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms