RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CFAP69A5D8W1 941 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 PSMC2P35998 433 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 ZBTB41Q5SVQ8 909 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 WLSQ5T9L3 541 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 NXNQ6DKJ4 435 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 USHBP1Q8N6Y0 703 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 RFWD2Q8NHY2 731 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 L3MBTL1Q9Y468 752 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 F6X3S4 739 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 VHLP40337 213 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 AARSP49588 968 aaKnown RBP eCLIP7.69□□□□□ -1.18
VPS53-204ENST00000437048 TAF12Q16514 161 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 NUGGCQ68CJ6 796 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 CDY2AQ9Y6F7 541 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 CDY1Q9Y6F8 540 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 IFNB1P01574 187 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 KYAT1Q16773 422 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 CRELD2Q6UXH1 353 aaPredicted RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 SSH3Q8TE77 659 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 KRT35Q92764 455 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 DDX56Q9NY93 547 aaKnown RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 ADCY9O60503 1353 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 AP3M2P53677 418 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 WDR93Q6P2C0 686 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 CDR2LQ86X02 465 aaPredicted RBP7.69□□□□□ -1.18
VPS53-204ENST00000437048 HDAC11Q96DB2 347 aa7.69□□□□□ -1.18
VPS53-204ENST00000437048 IQCB1Q15051 598 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 NUDCD3Q8IVD9 361 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 LPIN2Q92539 896 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 NAT9Q9BTE0 207 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 DISP3Q9P2K9 1392 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 ABCB1P08183 1280 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 UBE3CQ15386 1083 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TSPYL6Q8N831 410 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 PRRG3Q9BZD7 231 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 INTUQ9ULD6 942 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 ZBTB12Q9Y330 459 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 KRT87PA6NCN2 255 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 COPEO14579 308 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 MAP4P27816 1152 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 SOX6P35712 828 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 SERPINB9P50453 376 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 ARHGAP44Q17R89 818 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 PPP1R18Q6NYC8 613 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TPTE2Q6XPS3 522 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 P2RX5Q93086 422 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 APOL4Q9BPW4 351 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CEP72Q9P209 647 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CTNNAL1Q9UBT7 734 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 WARS2Q9UGM6 360 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 YTHDC2Q9H6S0 1430 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 NR1I2O75469 434 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 NAA20P61599 178 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 EPM2AIP1Q7L775 607 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.68□□□□□ -1.185e-7■■□□□ 14.2
VPS53-204ENST00000437048 CYTH3O43739 400 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 ECE1P42892 770 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 SLC1A1P43005 524 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 YWHAGP61981 247 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS53-204ENST00000437048 OSBPL1AQ9BXW6 950 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 WNT8AQ9H1J5 351 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 MAP3K15Q6ZN16 1313 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 DENND4BO75064 1496 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 FKBP6O75344 327 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 SERPINB8P50452 374 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TRMT5Q32P41 509 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 BLIDQ8IZY5 108 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 MRFAP1Q9Y605 127 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CPSF1Q10570 1443 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 MFAP3LO75121 409 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 MARK3P27448 753 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 SNRPFP62306 86 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 ARL13BQ3SXY8 428 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CC2D2BQ6DHV5 1058 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 BTNL9Q6UXG8 535 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 SH3TC1Q8TE82 1336 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CDK12Q9NYV4 1490 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 SLC12A6Q9UHW9 1150 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TRAF3IP3Q9Y228 551 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 LRCH1Q9Y2L9 728 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 USP15Q9Y4E8 981 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 GCNT3O95395 438 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 NLRP14Q86W24 1093 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 ANKRD42Q8N9B4 389 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 BTBD6Q96KE9 485 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TRIM31Q9BZY9 425 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CCDC90BQ9GZT6 254 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 AATFQ9NY61 560 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS53-204ENST00000437048 GTPBP10A4D1E9 387 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 PSMD3O43242 534 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CCNE1P24864 410 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TKTP29401 623 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 ZFP1Q6P2D0 407 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 LSM14BQ9BX40 385 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 CAAP1Q9H8G2 361 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 DDX25Q9UHL0 483 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 A0A087WWV3 80 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 KPNA4O00629 521 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 AFPP02771 609 aaKnown RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 BEST2Q8NFU1 509 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms