RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CEACAM5P06731 702 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 CT47B1P0C2W7 299 aaPredicted RBP5.22□□□□□ -1.57
HMGB3-203ENST00000430118 MYBL2P10244 700 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 DNM2P50570 870 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 CORO7P57737 925 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 SPIRE1Q08AE8 756 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 TERF2Q15554 542 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 NKPD1Q17RQ9 610 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 ABCB5Q2M3G0 1257 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 HABP4Q5JVS0 413 aaKnown RBP5.22□□□□□ -1.57
HMGB3-203ENST00000430118 HLA-DQA1Q5Y7H0 255 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 ARHGAP27Q6ZUM4 889 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 HDGFL2Q7Z4V5 671 aaPredicted RBP5.22□□□□□ -1.57
HMGB3-203ENST00000430118 SPACA3Q8IXA5 215 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 NAT16Q8N8M0 369 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 ZNF610Q8N9Z0 462 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 NLGN2Q8NFZ4 835 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 FOXP3Q9BZS1 431 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 C7orf69Q9H7B7 122 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 CATSPERZQ9NTU4 200 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 AP5S1Q9NUS5 200 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 USP36Q9P275 1121 aaKnown RBP5.22□□□□□ -1.57
HMGB3-203ENST00000430118 STOML1Q9UBI4 398 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 DUSP13Q9UII6 198 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 CBLCQ9ULV8 474 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 NUB1Q9Y5A7 615 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 XRN1Q8IZH2 1706 aaKnown RBP5.22□□□□□ -1.57
HMGB3-203ENST00000430118 TMEM131LA2VDJ0 1609 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 ADAMTS13Q76LX8 1427 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 NPHP3Q7Z494 1330 aa5.22□□□□□ -1.57
HMGB3-203ENST00000430118 MYOM2P54296 1465 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 BCL9LQ86UU0 1499 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 RALGAPBQ86X10 1494 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 MARF1Q9Y4F3 1742 aaKnown RBP5.21□□□□□ -1.58
HMGB3-203ENST00000430118 C7orf72A4D263 438 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 TGM5O43548 720 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 ADMP35318 185 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 ZEB1P37275 1124 aaPredicted RBP5.21□□□□□ -1.58
HMGB3-203ENST00000430118 LRRC32Q14392 662 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 GBX1Q14549 363 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 FIGNQ5HY92 759 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 MBLAC2Q68D91 279 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 RNF43Q68DV7 783 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 ZNF765Q7L2R6 523 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 DEFB132Q7Z7B7 95 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 RIOX2Q8IUF8 465 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 CISD2Q8N5K1 135 aaKnown RBP5.21□□□□□ -1.58
HMGB3-203ENST00000430118 SVIPQ8NHG7 77 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 SLC39A13Q96H72 371 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 TMEM169Q96HH4 297 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 FAXDC2Q96IV6 333 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 CDADC1Q9BWV3 514 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 EPB41L1Q9H4G0 881 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 ACSS2Q9NR19 701 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 OBP2AQ9NY56 170 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 X6R8D5 127 aa5.21□□□□□ -1.58
HMGB3-203ENST00000430118 C1orf167Q5SNV9 1468 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 RGPD1P0DJD0 1748 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 NALCNQ8IZF0 1738 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 IQGAP3Q86VI3 1631 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 NINLQ9Y2I6 1382 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 TMEM82A0PJX8 343 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 HIP1RO75146 1068 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 CYP17A1P05093 508 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 ZBTB48P10074 688 aaPredicted RBP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 TRIM27P14373 513 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 PHKG2P15735 406 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 PDE6AP16499 860 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 GRIK1P39086 918 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 BCL6P41182 706 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 IARSP41252 1262 aaKnown RBP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 SMAD3P84022 425 aaKnown RBP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 IRF9Q00978 393 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 TEKQ02763 1124 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 LAPTM5Q13571 262 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 BRD3Q15059 726 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 SMAD2Q15796 467 aaKnown RBP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 IFI16Q16666 785 aaKnown RBP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 MROH9Q5TGP6 573 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 BROXQ5VW32 411 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 CYP4F22Q6NT55 531 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 SLC51AQ86UW1 340 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 CMTR2Q8IYT2 770 aaKnown RBP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 NLGN4XQ8N0W4 816 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 ACAP3Q96P50 834 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 ORAI2Q96SN7 254 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 SPOCK3Q9BQ16 436 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 DBNDD2Q9BQY9 259 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 ANP32EQ9BTT0 268 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 SMURF1Q9HCE7 757 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 SEMA3GQ9NS98 782 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 C14orf119Q9NWQ9 140 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 ERVK13-1Q9NX77 482 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 CLDND1Q9NY35 253 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.2□□□□□ -1.58
HMGB3-203ENST00000430118 TNFRSF10DQ9UBN6 386 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 IP6K2Q9UHH9 426 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 RCAN3Q9UKA8 241 aa5.2□□□□□ -1.58
HMGB3-203ENST00000430118 PARD3Q8TEW0 1356 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 TMEM265A0A087WTH1 108 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 174.1 ms