RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 FAM13AO94988 1023 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 KIF20AO95235 890 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 EYA4O95677 639 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 PTMAP06454 111 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 PGK2P07205 417 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 P4HBP07237 508 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 PSAPP07602 524 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 XRCC6P12956 609 aaKnown RBP eCLIP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 KCNA2P16389 499 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 GAP43P17677 238 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 UBA1P22314 1058 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 ERCC5P28715 1186 aaPredicted RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 ADORA2AP29274 412 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 CASP1P29466 404 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 ICAM3P32942 547 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 QARSP47897 775 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 SARSP49591 514 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 INHBEP58166 350 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 CNTN2Q02246 1040 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 COASYQ13057 564 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 NOGQ13253 232 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 CAMK2BQ13554 666 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 GRB14Q14449 540 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 NEDD9Q14511 834 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 KMT5BQ4FZB7 885 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 FAM26FQ5R3K3 315 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 KLHL10Q6JEL2 608 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 MIS18BP1Q6P0N0 1132 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 STXBP4Q6ZWJ1 553 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 ARMCX2Q7L311 632 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 OTOP1Q7RTM1 612 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 GPR142Q7Z601 462 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 PLEKHH3Q7Z736 793 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 DHX40Q8IX18 779 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 FBXO16Q8IX29 292 aaPredicted RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 BANK1Q8NDB2 785 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 LRRC15Q8TF66 581 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 BBXQ8WY36 941 aaPredicted RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 EVPLQ92817 2033 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 TRIM47Q96LD4 638 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 PURBQ96QR8 312 aaKnown RBP6.63□□□□□ -1.35
HMGB3-202ENST00000419110 NACC1Q96RE7 527 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 NUDT12Q9BQG2 462 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 BHMT2Q9H2M3 363 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 ZSWIM4Q9H7M6 989 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 EFCC1Q9HA90 598 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 ZFYVE28Q9HCC9 887 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 VTA1Q9NP79 307 aa6.63□□□□□ -1.35
HMGB3-202ENST00000419110 SYNGAP1Q96PV0 1343 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SOWAHBA6NEL2 793 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 MYMKA6NI61 221 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SLC15A5A6NIM6 579 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SPATA31C2B4DYI2 1134 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 E9PMD0 336 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 NOP56O00567 594 aaKnown RBP6.62□□□□□ -1.35
HMGB3-202ENST00000419110 BACH1O14867 736 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 CBFA2T2O43439 604 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 STRNO43815 780 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 ALDH1A1P00352 501 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SUPT20HL2P0C7V6 817 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SPATA31C1P0DKV0 1188 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 CYP11B2P19099 503 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SLC12A3P55017 1021 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 PSMC5P62195 406 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 PRKCEQ02156 737 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SP4Q02446 784 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SPAG1Q07617 926 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 GRM1Q13255 1194 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 CTTNQ14247 550 aaKnown RBP6.62□□□□□ -1.35
HMGB3-202ENST00000419110 TTLL4Q14679 1199 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 IQCB1Q15051 598 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 COBLL1Q53SF7 1204 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 FAM160B1Q5W0V3 765 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 ISM2Q6H9L7 571 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SARM1Q6SZW1 724 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 METTL7BQ6UX53 244 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 B3GNT9Q6UX72 402 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SEPT14Q6ZU15 432 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 DYMQ7RTS9 669 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 KCNK18Q7Z418 384 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 DPP9Q86TI2 863 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 CATSPER3Q86XQ3 398 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 FAM114A1Q8IWE2 563 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 TPH2Q8IWU9 490 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 TRMT44Q8IYL2 757 aaKnown RBP6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SYT2Q8N9I0 419 aaPredicted RBP6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SCFD2Q8WU76 684 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 DDX12PQ92771 950 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 TRIM44Q96DX7 344 aaPredicted RBP6.62□□□□□ -1.35
HMGB3-202ENST00000419110 FAM167AQ96KS9 214 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 MTRQ99707 1265 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 APBA2Q99767 749 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 TSG101Q99816 390 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SENP7Q9BQF6 1050 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 REEP2Q9BRK0 252 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 TIPINQ9BVW5 301 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 ZHX3Q9H4I2 956 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 RGL1Q9NZL6 768 aa6.62□□□□□ -1.35
HMGB3-202ENST00000419110 SEPT9Q9UHD8 586 aaPredicted RBP6.62□□□□□ -1.35
HMGB3-202ENST00000419110 CPA4Q9UI42 421 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms