RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 MSLNLQ96KJ4 702 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 PPP1R16BQ96T49 567 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 CDHR5Q9HBB8 845 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 JADE2Q9NQC1 790 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 ERAP1Q9NZ08 941 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 PRKAG3Q9UGI9 489 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 SEC63Q9UGP8 760 aaKnown RBP14.78□□□□□ -0.04
LINC00339-202ENST00000416769 CD207Q9UJ71 328 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 PCDHA6Q9UN73 950 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 PCDHA8Q9Y5H6 950 aa14.78□□□□□ -0.04
LINC00339-202ENST00000416769 EVPLQ92817 2033 aa14.77□□□□□ -0.04
LINC00339-202ENST00000416769 ADAMTS3O15072 1205 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 PPFIA3O75145 1194 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 NRIP1P48552 1158 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 ITGB3BPQ13352 177 aaPredicted RBP14.77□□□□□ -0.05
LINC00339-202ENST00000416769 C8orf34Q49A92 452 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 IER5LQ5T953 404 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 XRRA1Q6P2D8 792 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 NFXL1Q6ZNB6 911 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 VN1R2Q8NFZ6 395 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 LMAN2LQ9H0V9 348 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 PADI3Q9ULW8 664 aa14.77□□□□□ -0.05
LINC00339-202ENST00000416769 FNDC1Q4ZHG4 1894 aaPredicted RBP14.77□□□□□ -0.05
LINC00339-202ENST00000416769 STXBP3O00186 592 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 PER2O15055 1255 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 NDUFV1P49821 464 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 WWC2Q6AWC2 1192 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 HEATR3Q7Z4Q2 680 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 PRSS33Q8NF86 280 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 POF1BQ8WVV4 589 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 TMEM40Q8WWA1 233 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 TCEANC2Q96MN5 208 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 LSG1Q9H089 658 aaKnown RBP14.76□□□□□ -0.05
LINC00339-202ENST00000416769 SMARCAD1Q9H4L7 1026 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 JPH1Q9HDC5 661 aaPredicted RBP14.76□□□□□ -0.05
LINC00339-202ENST00000416769 KCNH7Q9NS40 1196 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 TMEM260Q9NX78 707 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 TRPC6Q9Y210 931 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 TRPV2Q9Y5S1 764 aa14.76□□□□□ -0.05
LINC00339-202ENST00000416769 CACNA1HO95180 2353 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 IGSF9BQ9UPX0 1349 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 DDX39AO00148 427 aaKnown RBP14.75□□□□□ -0.05
LINC00339-202ENST00000416769 EPB41L2O43491 1005 aaKnown RBP14.75□□□□□ -0.05
LINC00339-202ENST00000416769 CCNE2O96020 404 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 KIF5BP33176 963 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 ACTR2P61160 394 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 HERC4Q5GLZ8 1057 aaPredicted RBP14.75□□□□□ -0.05
LINC00339-202ENST00000416769 TMTC3Q6ZXV5 915 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 RSPH3Q86UC2 560 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 MICU3Q86XE3 530 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 NPAS4Q8IUM7 802 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 CMTR2Q8IYT2 770 aaKnown RBP14.75□□□□□ -0.05
LINC00339-202ENST00000416769 GIMAP8Q8ND71 665 aaPredicted RBP14.75□□□□□ -0.05
LINC00339-202ENST00000416769 MAP3K14Q99558 947 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 SLC9A2Q9UBY0 812 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 CDH22Q9UJ99 828 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 FAM50BQ9Y247 325 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 GINS2Q9Y248 185 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 RWDD3Q9Y3V2 267 aa14.75□□□□□ -0.05
LINC00339-202ENST00000416769 CNTNAP5Q8WYK1 1306 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 SLC27A2O14975 620 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 REC8O95072 547 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 SCG2P13521 617 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 PAK2Q13177 524 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 FAM102BQ5T8I3 360 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 SMRP1Q8NCR6 262 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 MXRA8Q9BRK3 442 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 PLVAPQ9BX97 442 aa14.74□□□□□ -0.05
LINC00339-202ENST00000416769 CELF4Q9BZC1 486 aaKnown RBP14.74□□□□□ -0.05
LINC00339-202ENST00000416769 NOC2LQ9Y3T9 749 aaKnown RBP14.74□□□□□ -0.05
LINC00339-202ENST00000416769 USP15Q9Y4E8 981 aaPredicted RBP14.74□□□□□ -0.05
LINC00339-202ENST00000416769 CCDC69A6NI79 296 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 SPDYE3A6NKU9 549 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 SMARCA1P28370 1054 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 ERVFC1P60507 584 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 APOBRQ0VD83 1088 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 NFX1Q12986 1120 aaKnown RBP14.73□□□□□ -0.05
LINC00339-202ENST00000416769 MTHFD1LQ6UB35 978 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 EFHBQ8N7U6 833 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 P2RX5Q93086 422 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 CDHR1Q96JP9 859 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 APOL5Q9BWW9 433 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 BACH2Q9BYV9 841 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 AGO4Q9HCK5 861 aaKnown RBP14.73□□□□□ -0.05
LINC00339-202ENST00000416769 ERVK-5Q9HDB9 667 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 PCDHA2Q9Y5H9 948 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 KMT2EQ8IZD2 1858 aa14.73□□□□□ -0.05
LINC00339-202ENST00000416769 RRN3P2A6NIE6 340 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 ZBTB42B2RXF5 422 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 NCK2O43639 380 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 EYA4O95677 639 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 FGFR1P11362 822 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 ATP4AP20648 1035 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 SP100P23497 879 aaPredicted RBP14.72□□□□□ -0.05
LINC00339-202ENST00000416769 MCM5P33992 734 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 STAT5BP51692 787 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 KRT76Q01546 638 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 IER5Q5VY09 327 aa14.72□□□□□ -0.05
LINC00339-202ENST00000416769 TRMT1LQ7Z2T5 733 aaKnown RBP14.72□□□□□ -0.05
LINC00339-202ENST00000416769 CCDC60Q8IWA6 550 aaPredicted RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms