RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 RAB30Q15771 203 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 FAM26DQ5JW98 314 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 MOXD1Q6UVY6 613 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 TRMT1LQ7Z2T5 733 aaKnown RBP16.75■□□□□ 0.27
LIMS4-201ENST00000413601 NEK8Q86SG6 692 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 CKAP2LQ8IYA6 745 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 ATP8B4Q8TF62 1192 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 SLC9A7Q96T83 725 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 TEKT3Q9BXF9 490 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 NKX2-4Q9H2Z4 354 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 UNC45AQ9H3U1 944 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 ZNF576Q9H609 170 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 UPF2Q9HAU5 1272 aaKnown RBP16.75■□□□□ 0.27
LIMS4-201ENST00000413601 BRMS1Q9HCU9 246 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 GABBR1Q9UBS5 961 aa16.75■□□□□ 0.27
LIMS4-201ENST00000413601 DDX25Q9UHL0 483 aaKnown RBP16.75■□□□□ 0.27
LIMS4-201ENST00000413601 YBX2Q9Y2T7 364 aaKnown RBP16.75■□□□□ 0.27
LIMS4-201ENST00000413601 MAFBQ9Y5Q3 323 aaPredicted RBP16.75■□□□□ 0.27
LIMS4-201ENST00000413601 MYO9BQ13459 2157 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 TMEM265A0A087WTH1 108 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 WDR64B1ANS9 1081 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 HBP1O60381 514 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 PSMD10O75832 226 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 CHRNA1P02708 482 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 MMP1P03956 469 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 KCNJ6P48051 423 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 WDR5P61964 334 aaKnown RBP16.74■□□□□ 0.27
LIMS4-201ENST00000413601 TRIM29Q14134 588 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 IKBKEQ14164 716 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 RABEP1Q15276 862 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 PLEKHG4Q58EX7 1191 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 KRT40Q6A162 431 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 RPAINQ86UA6 219 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 RSPH3Q86UC2 560 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 DBF4BQ8NFT6 615 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 ETNPPLQ8TBG4 499 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 TNFRSF25Q93038 417 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 CDX2Q99626 313 aaPredicted RBP16.74■□□□□ 0.27
LIMS4-201ENST00000413601 FAM49AQ9H0Q0 323 aaPredicted RBP16.74■□□□□ 0.27
LIMS4-201ENST00000413601 DISC1Q9NRI5 854 aa16.74■□□□□ 0.27
LIMS4-201ENST00000413601 ABHD14A-ACY1A0A1B0GW23 586 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 BTBD18B2RXH4 712 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 CCNT1O60563 726 aaKnown RBP16.73■□□□□ 0.27
LIMS4-201ENST00000413601 DEFB103AP81534 67 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 MTHFD1LQ6UB35 978 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 TMCO2Q7Z6W1 182 aaPredicted RBP16.73■□□□□ 0.27
LIMS4-201ENST00000413601 PHOSPHO2Q8TCD6 241 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 LLPHQ9BRT6 129 aaKnown RBP16.73■□□□□ 0.27
LIMS4-201ENST00000413601 SH2B1Q9NRF2 756 aaPredicted RBP16.73■□□□□ 0.27
LIMS4-201ENST00000413601 STXBP5LQ9Y2K9 1186 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 PCDHA2Q9Y5H9 948 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 PCDHA11Q9Y5I1 949 aa16.73■□□□□ 0.27
LIMS4-201ENST00000413601 ZBTB42B2RXF5 422 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 GCFC2P16383 781 aaKnown RBP16.72■□□□□ 0.27
LIMS4-201ENST00000413601 KLRC1P26715 233 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 SFNP31947 248 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 JAK3P52333 1124 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 GUCY1B3Q02153 619 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 MGAT3Q09327 533 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 GRIN2CQ14957 1233 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 ZNF484Q5JVG2 852 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 PPP4R3AQ6IN85 833 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 MIER3Q7Z3K6 550 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 HERC6Q8IVU3 1022 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 DIS3L2Q8IYB7 885 aaKnown RBP16.72■□□□□ 0.27
LIMS4-201ENST00000413601 BBXQ8WY36 941 aaPredicted RBP16.72■□□□□ 0.27
LIMS4-201ENST00000413601 MYLIPQ8WY64 445 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 SEPT8Q92599 483 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 SLC28A3Q9HAS3 691 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 CDY2AQ9Y6F7 541 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 COL1A2P08123 1366 aa16.72■□□□□ 0.27
LIMS4-201ENST00000413601 IGSF9BQ9UPX0 1349 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 ZNF862O60290 1169 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 GHRP10912 638 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 MRPS6P82932 125 aaKnown RBP16.71■□□□□ 0.27
LIMS4-201ENST00000413601 TMEM62Q0P6H9 643 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 UGCGQ16739 394 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 B3GNT9Q6UX72 402 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.71■□□□□ 0.27
LIMS4-201ENST00000413601 C8orf76Q96K31 380 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 NAP1L4Q99733 375 aaKnown RBP16.71■□□□□ 0.27
LIMS4-201ENST00000413601 KCNMB3Q9NPA1 279 aa16.71■□□□□ 0.27
LIMS4-201ENST00000413601 SMIM35A0A1B0GVV1 85 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 ST18O60284 1047 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 EFCAB14O75071 495 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 LPIN1Q14693 890 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 IER5Q5VY09 327 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 PPP2R2DQ66LE6 453 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 RDM1Q8NG50 284 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 FAM167AQ96KS9 214 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 FAM20AQ96MK3 541 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 TBC1D32Q96NH3 1257 aa16.7■□□□□ 0.26
LIMS4-201ENST00000413601 IFIH1Q9BYX4 1025 aaKnown RBP16.7■□□□□ 0.26
LIMS4-201ENST00000413601 ARID2Q68CP9 1835 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 KIF28PB7ZC32 967 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 TLL1O43897 1013 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 MARCH6O60337 910 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 CD2BP2O95400 341 aaKnown RBP16.69■□□□□ 0.26
LIMS4-201ENST00000413601 C22orf31O95567 290 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 OATP04181 439 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms