RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 VPS54Q9P1Q0 977 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 GCFC2P16383 781 aaKnown RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 YBX3P16989 372 aaKnown RBP eCLIP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 CYP2C19P33261 490 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 PPP1R2P41236 205 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 FSCN1Q16658 493 aaKnown RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 SWSAP1Q6NVH7 229 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 NECAB1Q8N987 351 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 SPATC1LQ9H0A9 340 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ABHD16BQ9H3Z7 469 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ZSWIM4Q9H7M6 989 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 GDAQ9Y2T3 454 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 MROH1Q8NDA8 1641 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 KIF13AQ9H1H9 1805 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 NEURL4Q96JN8 1562 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 SYNGAP1Q96PV0 1343 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 CTAGE9A4FU28 777 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 K7ERI5 159 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 CREB3O43889 395 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ADALQ6DHV7 355 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 FANCBQ8NB91 859 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 DDX50Q9BQ39 737 aaKnown RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 AOX1Q06278 1338 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 TM4SF1P30408 202 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ARL4DP49703 201 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 TFAMQ00059 246 aaKnown RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 SATB1Q01826 763 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 PREPLQ4J6C6 727 aaPredicted RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 TMC6Q7Z403 805 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 STRIP2Q9ULQ0 834 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ZKSCAN5Q9Y2L8 839 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 PITPNM2Q9BZ72 1349 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 CYP2D7A0A087X1C5 515 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ESYT2A0FGR8 921 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 POTEB3A0JP26 581 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 MUM1Q2TAK8 710 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 PHLDB3Q6NSJ2 640 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 POTEBQ6S5H4 581 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 TLK2Q86UE8 772 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 IFNL1Q8IU54 200 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 SIX6OS1Q8N1H7 587 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 ARNTL2Q8WYA1 636 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 EAF2Q96CJ1 260 aaPredicted RBP7.93□□□□□ -1.14
SCN9A-202ENST00000409435 CAPZA3Q96KX2 299 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 FAM227BQ96M60 508 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 DISC1Q9NRI5 854 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 SH3BP1Q9Y3L3 701 aa7.93□□□□□ -1.14
SCN9A-202ENST00000409435 CYFIP1Q7L576 1253 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 UCMAQ8WVF2 138 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 SNX19Q92543 992 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 TBC1D7Q9P0N9 293 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 FLT1P17948 1338 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 CYP2D6P10635 497 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 SKILP12757 684 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 ATP2A2P16615 1042 aaKnown RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 ATICP31939 592 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 FKBP1AP62942 108 aaKnown RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 KYAT1Q16773 422 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 PI16Q6UXB8 463 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 PCDHA6Q9UN73 950 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 PCDHA8Q9Y5H6 950 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 RSPH10B2B2RC85 870 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 TXNDC9O14530 226 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 HEXIM1O94992 359 aaKnown RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 RSPH10BP0C881 870 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 DLATP10515 647 aaKnown RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 AKR1B1P15121 316 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 PIK3CAP42336 1068 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 SNX17Q15036 470 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 CCDC184Q52MB2 194 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 MCUR1Q96AQ8 359 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 HIPK3Q9H422 1215 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 JPH1Q9HDC5 661 aaPredicted RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 COL4A3BPQ9Y5P4 624 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 E9PCH4 1651 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 SERPINI2O75830 405 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 ACADMP11310 421 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 TMEM62Q0P6H9 643 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 CALCOCO2Q13137 446 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 HDAC1Q13547 482 aaPredicted RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 CAMK4Q16566 473 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 PDZD4Q76G19 769 aaPredicted RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 PTF1AQ7RTS3 328 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 BRAPQ7Z569 592 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 CEP95Q96GE4 821 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 MRPL9Q9BYD2 267 aaKnown RBP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 MCOLN1Q9GZU1 580 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.92□□□□□ -1.14
SCN9A-202ENST00000409435 Q9H521 79 aa7.92□□□□□ -1.14
SCN9A-202ENST00000409435 SPECC1L-ADORA2AF8WAN1 911 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 KIF1CO43896 1103 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ACVR2BQ13705 512 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 PDCD2Q16342 344 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DYMQ7RTS9 669 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ZNF467Q7Z7K2 595 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 RASEFQ8IZ41 740 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 HVCN1Q96D96 273 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 EPSTI1Q96J88 318 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 E7EWF7 191 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms