RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 SLC35C1Q96A29 364 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.82□□□□□ -0.68
MSH2-202ENST00000406134 AFF2P51816 1311 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 PRKCIP41743 596 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 PABPC4Q13310 644 aaKnown RBP eCLIP10.82□□□□□ -0.683e-13■□□□□ 10.3
MSH2-202ENST00000406134 AP3B2Q13367 1082 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 SLFN13Q68D06 897 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 CACNA2D4Q7Z3S7 1137 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 CCDC65Q8IXS2 484 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 GMCL1Q96IK5 515 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 ALS2CR12Q96Q35 445 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 TANGO6Q9C0B7 1094 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 DBNDD1Q9H9R9 158 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 DOCK5Q9H7D0 1870 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 ATP8B3O60423 1300 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 GOLGA6BA6NDN3 693 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 GNA14O95837 355 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 NDUFB10O96000 172 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 EPHB4P54760 987 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 KNOP1Q1ED39 458 aaKnown RBP10.82□□□□□ -0.68
MSH2-202ENST00000406134 PRR16Q569H4 304 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 BTNL9Q6UXG8 535 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 PPP4R3CPQ6ZMV5 832 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 FRMD5Q7Z6J6 570 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 SLFN11Q7Z7L1 901 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 SLC30A5Q8TAD4 765 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 LRRC4CQ9HCJ2 640 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 TBX3O15119 743 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 SSBP05455 408 aaKnown RBP eCLIP10.81□□□□□ -0.68
MSH2-202ENST00000406134 MREGQ8N565 214 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 LNX1Q8TBB1 728 aaPredicted RBP10.81□□□□□ -0.68
MSH2-202ENST00000406134 SCFD2Q8WU76 684 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 AKT1S1Q96B36 256 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 NEUROG2Q9H2A3 272 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 NAGPAQ9UK23 515 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 IGSF9BQ9UPX0 1349 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 F5H6K3 240 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 GDF11O95390 407 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 KLRC3Q07444 240 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 RAPGEF1Q13905 1077 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 COG2Q14746 738 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 TDRD12Q587J7 1177 aaKnown RBP10.81□□□□□ -0.68
MSH2-202ENST00000406134 COL23A1Q86Y22 540 aaPredicted RBP10.81□□□□□ -0.68
MSH2-202ENST00000406134 USP38Q8NB14 1042 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 HSD17B14Q9BPX1 270 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 NUCKS1Q9H1E3 243 aaKnown RBP10.81□□□□□ -0.68
MSH2-202ENST00000406134 FBXL5Q9UKA1 691 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 RAD51CO43502 376 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 CYP3A4P08684 503 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 IRAK1P51617 712 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 ARID5AQ03989 594 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 EMBQ6PCB8 327 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 B3GNT9Q6UX72 402 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 SLFN12Q8IYM2 578 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 CCDC17Q96LX7 622 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 MRIQ9BWK5 157 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 RGL1Q9NZL6 768 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 NFU1Q9UMS0 254 aa10.81□□□□□ -0.68
MSH2-202ENST00000406134 FRMPD4Q14CM0 1322 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 H0YGN5 161 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 PIK3CDO00329 1044 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 DDX3XO00571 662 aaKnown RBP eCLIP10.8□□□□□ -0.683e-14■□□□□ 9.2
MSH2-202ENST00000406134 CES2O00748 559 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 KRT14P02533 472 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 HOXA13P31271 388 aaPredicted RBP10.8□□□□□ -0.68
MSH2-202ENST00000406134 ERVK-9P63128 1117 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 NNTQ13423 1086 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 UAP1Q16222 522 aaPredicted RBP10.8□□□□□ -0.68
MSH2-202ENST00000406134 KIAA0753Q2KHM9 967 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 CERKLQ49MI3 558 aaPredicted RBP10.8□□□□□ -0.68
MSH2-202ENST00000406134 GLE1Q53GS7 698 aaKnown RBP10.8□□□□□ -0.68
MSH2-202ENST00000406134 DCAF12L1Q5VU92 463 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 STRA6Q9BX79 667 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 NFS1Q9Y697 457 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 RLFQ13129 1914 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 PDXKO00764 312 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 NPM3O75607 178 aaKnown RBP10.8□□□□□ -0.68
MSH2-202ENST00000406134 NPR1P16066 1061 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 SKOR1P84550 965 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 USH1GQ495M9 461 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 EMC10Q5UCC4 262 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 IQCEQ6IPM2 695 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 RINT1Q6NUQ1 792 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 C1orf186Q6ZWK4 172 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 KSR1Q8IVT5 923 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 LCTP09848 1927 aa10.8□□□□□ -0.68
MSH2-202ENST00000406134 COL11A1P12107 1806 aaPredicted RBP10.8□□□□□ -0.68
MSH2-202ENST00000406134 SLITRK3O94933 977 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 KLHL30Q0D2K2 578 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 ASIC2Q16515 512 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 HSP90B2PQ58FF3 399 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 C8orf74Q6P047 294 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 OTOP1Q7RTM1 612 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 KIAA0825Q8IV33 1275 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 SH2D3CQ8N5H7 860 aa10.79□□□□□ -0.68
MSH2-202ENST00000406134 NAP1L4Q99733 375 aaKnown RBP10.79□□□□□ -0.68
MSH2-202ENST00000406134 EIF2AK1Q9BQI3 630 aaKnown RBP10.79□□□□□ -0.68
MSH2-202ENST00000406134 POLR3CQ9BUI4 534 aaPredicted RBP10.79□□□□□ -0.68
MSH2-202ENST00000406134 ZC3H12CQ9C0D7 883 aaKnown RBP10.79□□□□□ -0.68
MSH2-202ENST00000406134 ANKRD65E5RJM6 399 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms