RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 CRB1P82279 1406 aa19.64■□□□□ 0.74
COL18A1-204ENST00000400337 ACTN1P12814 892 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 HSPA6P17066 643 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 GARSP41250 739 aaKnown RBP19.64■□□□□ 0.73
COL18A1-204ENST00000400337 F5H6K3 240 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 KLRC3Q07444 240 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 PRPSAP1Q14558 356 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 TSGA10IPQ3SY00 556 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 SMIM5Q71RC9 77 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 DNAJC12Q9UKB3 198 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 GSTA1P08263 222 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 GSTA2P09210 222 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 PPP1R18Q6NYC8 613 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 KCTD6Q8NC69 237 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 SLC10A4Q96EP9 437 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 FEM1BQ9UK73 627 aa19.64■□□□□ 0.73
COL18A1-204ENST00000400337 ABCB11O95342 1321 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 PNPLA7Q6ZV29 1317 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 NR3C1P04150 777 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 QRICH1Q2TAL8 776 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 SLFN12LQ6IEE8 588 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 PADI6Q6TGC4 694 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 METTL23Q86XA0 190 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 ADGRF4Q8IZF3 695 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 HEXIM2Q96MH2 286 aaKnown RBP19.63■□□□□ 0.73
COL18A1-204ENST00000400337 ABHD10Q9NUJ1 306 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 BASP1P80723 227 aaKnown RBP19.63■□□□□ 0.73
COL18A1-204ENST00000400337 COASYQ13057 564 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 THNSL1Q8IYQ7 743 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 FAM20AQ96MK3 541 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 CROCC2H7BZ55 1655 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 ECE1P42892 770 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 LIG3P49916 1009 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 IL9RQ01113 521 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 SPATS2Q86XZ4 545 aaKnown RBP19.63■□□□□ 0.73
COL18A1-204ENST00000400337 DYDC2Q96IM9 177 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 WRNIP1Q96S55 665 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 PVALEFA0A1B0GWK0 134 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 ZSCAN20P17040 1043 aaPredicted RBP19.63■□□□□ 0.73
COL18A1-204ENST00000400337 SURF1Q15526 300 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 RC3H1Q5TC82 1133 aaKnown RBP19.63■□□□□ 0.73
COL18A1-204ENST00000400337 C4orf50Q6ZRC1 276 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 LRRC4Q9HBW1 653 aa19.63■□□□□ 0.73
COL18A1-204ENST00000400337 CLCN6P51797 869 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 STAG2Q8N3U4 1231 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 ORC4O43929 436 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 ARL4AP40617 200 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 SLCO1A2P46721 670 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 CCDC38Q502W7 563 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 DARS2Q6PI48 645 aaKnown RBP19.62■□□□□ 0.73
COL18A1-204ENST00000400337 RAB3IPQ96QF0 476 aaPredicted RBP19.62■□□□□ 0.73
COL18A1-204ENST00000400337 SPZ1Q9BXG8 430 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 GUCY1A2P33402 732 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 SNRNP48Q6IEG0 339 aaKnown RBP19.62■□□□□ 0.73
COL18A1-204ENST00000400337 SHC4Q6S5L8 630 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 PROM2Q8N271 834 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 BPIFA3Q9BQP9 254 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 FAM49AQ9H0Q0 323 aaPredicted RBP19.62■□□□□ 0.73
COL18A1-204ENST00000400337 SMYD2Q9NRG4 433 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 WDR64B1ANS9 1081 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 EXOSC10Q01780 885 aaKnown RBP19.62■□□□□ 0.73
COL18A1-204ENST00000400337 CEP72Q9P209 647 aa19.62■□□□□ 0.73
COL18A1-204ENST00000400337 POTEFA5A3E0 1075 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 TDP2O95551 362 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 CHGBP05060 677 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 POTEIP0CG38 1075 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 DR1Q01658 176 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 STXBP2Q15833 593 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 POTEGQ6S5H5 508 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 POTEEQ6S8J3 1075 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 NEDD1Q8NHV4 660 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 LRRC53A6NM62 1247 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 AKR1B1P15121 316 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 RNASELQ05823 741 aaKnown RBP19.61■□□□□ 0.73
COL18A1-204ENST00000400337 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.61■□□□□ 0.736e-9■□□□□ 9.6
COL18A1-204ENST00000400337 PLA2G12BQ9BX93 195 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 PRPSAP2O60256 369 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 CPP00450 1065 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 GCLMP48507 274 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 MRPS25P82663 173 aaKnown RBP19.61■□□□□ 0.73
COL18A1-204ENST00000400337 TMED2Q15363 201 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 KIF2CQ99661 725 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 MXD3Q9BW11 206 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 ATP6V0A4Q9HBG4 840 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 BCAP29Q9UHQ4 241 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 XXYLT1Q8NBI6 393 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 NSUN4Q96CB9 384 aaKnown RBP19.61■□□□□ 0.73
COL18A1-204ENST00000400337 TBC1D22BQ9NU19 505 aa19.61■□□□□ 0.73
COL18A1-204ENST00000400337 MAGED2Q9UNF1 606 aaPredicted RBP19.61■□□□□ 0.73
COL18A1-204ENST00000400337 PFDN6O15212 129 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 FOXN1O15353 648 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 STAT3P40763 770 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 ZKSCAN8Q15776 578 aaPredicted RBP19.6■□□□□ 0.73
COL18A1-204ENST00000400337 DNAAF3Q8N9W5 541 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 ZNF526Q8TF50 670 aaPredicted RBP19.6■□□□□ 0.73
COL18A1-204ENST00000400337 HOXC10Q9NYD6 342 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 KCNH2Q12809 1159 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 ZNF394Q53GI3 561 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 RHOT2Q8IXI1 618 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 MCPH1Q8NEM0 835 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms