RNA–Protein interactions for RNA: ENST00000399655.5

CACNA1C-220, Transcript of calcium voltage-gated channel subunit alpha1 C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CACNA1C, Length 13,433 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1C-220ENST00000399655 TRIM54Q9BYV2 358 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 PDHA1P08559 390 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 WARSP23381 471 aaKnown RBP9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 OSBPL6Q9BZF3 934 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 YIPF3Q9GZM5 350 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 C1orf115Q9H7X2 142 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 UBAP1LF5GYI3 381 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 SOX5P35711 763 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 PKN2Q16513 984 aaKnown RBP9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 NDUFAF6Q330K2 333 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 FASTKD1Q53R41 847 aaKnown RBP9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 TSSK1BQ9BXA7 367 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 IPPQ9Y573 584 aa9.17□□□□□ -0.94
CACNA1C-220ENST00000399655 POTEMA6NI47 508 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CD19P15391 556 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 TBC1D9BQ66K14 1250 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 PLEKHA7Q6IQ23 1121 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 POTEHQ6S545 545 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 POTEGQ6S5H5 508 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 DNAAF3Q8N9W5 541 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 FOPNLQ96NB1 174 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CTNNAL1Q9UBT7 734 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 A0A0X1KG70 313 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 BBS9Q3SYG4 887 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 HERC4Q5GLZ8 1057 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 KLHL25Q9H0H3 589 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CCDC134Q9H6E4 229 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 SPEF1Q9Y4P9 236 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 KDM3AQ9Y4C1 1321 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 PNMA8CA0A1B0GUJ8 204 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 ADCY2Q08462 1091 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 GRM1Q13255 1194 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 GDAP1Q8TB36 358 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 EXOC4Q96A65 974 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 C8orf4Q9NR00 106 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CENPUQ71F23 418 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 RYBPQ8N488 228 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 ABTB2Q8N961 1025 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 EHD1Q9H4M9 534 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 MYO1AQ9UBC5 1043 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 ATP12AP54707 1039 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CCDC88BA6NC98 1476 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 ADCY7P51828 1080 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 EPHB4P54760 987 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CAV3P56539 151 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 RNASE9P60153 205 aaKnown RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 MRPS25P82663 173 aaKnown RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 DEPDC1BQ8WUY9 529 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CCDC127Q96BQ5 260 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 USP28Q96RU2 1077 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 C20orf96Q9NUD7 363 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 MARCKSP29966 332 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 SPARCL1Q14515 664 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 SPANXN2Q5MJ10 180 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 OTUD6AQ7L8S5 288 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 UBE2Q1Q7Z7E8 422 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 COMMD9Q9P000 198 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 SGK1O00141 431 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 C1DQ13901 141 aaKnown RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 PHKG1Q16816 387 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 SPATA17Q96L03 361 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 BCL2L14Q9BZR8 327 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 MPP2Q14168 576 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 PIPSLA2A3N6 862 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 RNF103O00237 685 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 S100A12P80511 92 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 ITGB3BPQ13352 177 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 TTC22Q5TAA0 569 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 TTC29Q8NA56 475 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 RSL24D1Q9UHA3 163 aaKnown RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 DIS3Q9Y2L1 958 aaKnown RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 USF2Q15853 346 aaPredicted RBP9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 FICDQ9BVA6 458 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 CADPSQ9ULU8 1353 aa9.16□□□□□ -0.94
CACNA1C-220ENST00000399655 ARF3P61204 181 aaPredicted RBP9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 ARF1P84077 181 aaKnown RBP9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 SOS2Q07890 1332 aaPredicted RBP9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 RASGRF1Q13972 1273 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 SF3B3Q15393 1217 aaKnown RBP9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 TCP11X2Q5H9J9 407 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 EHD3Q9NZN3 535 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 ATP5J2-PTCD1G3V325 749 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 PAK1Q13153 545 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 HSPA4LO95757 839 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 PLS3P13797 630 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 TTC23LQ6PF05 361 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 MICU2Q8IYU8 434 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 HPS1Q92902 700 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 PCDH18Q9HCL0 1135 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 WRNQ14191 1432 aaPredicted RBP eCLIP9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 TNNI2P48788 182 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 GALNT3Q14435 633 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 PKN1Q16512 942 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 C10orf76Q5T2E6 689 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 RETREG2Q8NC44 543 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 ARHGEF35A5YM69 484 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 MT-ND3P03897 115 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 NPR2P20594 1047 aa9.15□□□□□ -0.94
CACNA1C-220ENST00000399655 RARSP54136 660 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms