RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 HERVK_113P62684 666 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 GFPT1Q06210 699 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-203ENST00000394269 KIF5AQ12840 1032 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 DCAF15Q66K64 600 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 MCF2L2Q86YR7 1114 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 NACC1Q96RE7 527 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 IFIH1Q9BYX4 1025 aaKnown RBP12.26□□□□□ -0.45
TCOF1-203ENST00000394269 KIAA1683Q9H0B3 1180 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 KCTD10Q9H3F6 313 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 PARVGQ9HBI0 331 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 RNF146Q9NTX7 359 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 CLEC11AQ9Y240 323 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 SIPA1L1O43166 1804 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 SLC9A1P19634 815 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 KCNMA1Q12791 1236 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 ZNF280CQ8ND82 737 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 CLEC4DQ8WXI8 215 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 LPAR1Q92633 364 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 NAPGQ99747 312 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-203ENST00000394269 POLR3CQ9BUI4 534 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-203ENST00000394269 ARHGAP20Q9P2F6 1191 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 SIK3Q9Y2K2 1263 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 QSER1Q2KHR3 1735 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 KRT86O43790 486 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 AKAP3O75969 853 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 XRCC5P13010 732 aaKnown RBP12.25□□□□□ -0.45
TCOF1-203ENST00000394269 BACE1P56817 501 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 ZNF280AP59817 542 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-203ENST00000394269 PTPROQ16827 1216 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 FAM133AQ8N9E0 248 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 RETREG2Q8NC44 543 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 SLC5A5Q92911 643 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 SPAG5Q96R06 1193 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 SLC38A10Q9HBR0 1119 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 PPP1R9AQ9ULJ8 1098 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 MRFAP1Q9Y605 127 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 NR3C1P04150 777 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 PTPRAP18433 802 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 RPS12P25398 132 aaKnown RBP12.25□□□□□ -0.45
TCOF1-203ENST00000394269 MRPS9P82933 396 aaKnown RBP12.25□□□□□ -0.45
TCOF1-203ENST00000394269 TKFCQ3LXA3 575 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 ZCWPW2Q504Y3 356 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 TTYH3Q9C0H2 523 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 PRDM4Q9UKN5 801 aa12.25□□□□□ -0.45
TCOF1-203ENST00000394269 PITPNM2Q9BZ72 1349 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 BUB1O43683 1085 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 CALUO43852 315 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 SEC31AO94979 1220 aaKnown RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 HOXD13P35453 343 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 KIF11P52732 1056 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 NPEPPSP55786 919 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 TTLL12Q14166 644 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 GLIPR1L2Q4G1C9 344 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 EAPPQ56P03 285 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 PADI6Q6TGC4 694 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 CNKSR2Q8WXI2 1034 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 GPRC5CQ9NQ84 441 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 TISP43B9A030 160 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 VWA5AO00534 786 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 HIP1RO75146 1068 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 PNMA6AP0CW24 399 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 MAGEA1P43355 309 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 CHMP4BP1P59074 171 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 ITGB3BPQ13352 177 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 PLA2G4FQ68DD2 849 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 CAGE1Q8TC20 777 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 CCDC94Q9BW85 323 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 MLXIPQ9HAP2 919 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 SYNPO2Q9UMS6 1093 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 EPB41P11171 864 aaKnown RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 GJB7Q6PEY0 223 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 PAXIP1Q6ZW49 1069 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-203ENST00000394269 C1orf186Q6ZWK4 172 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 SCYL3Q8IZE3 742 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 ADAMTS1Q9UHI8 967 aa12.24□□□□□ -0.45
TCOF1-203ENST00000394269 K7ENM7 598 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 FZD9O00144 591 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 ZNF263O14978 683 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 TADA3O75528 432 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 RPL13P26373 211 aaKnown RBP12.23□□□□□ -0.45
TCOF1-203ENST00000394269 CXCR5P32302 372 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 MATR3P43243 847 aaKnown RBP eCLIP12.23□□□□□ -0.45
TCOF1-203ENST00000394269 SOX10P56693 466 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 PPP2R5CQ13362 524 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 EPHA7Q15375 998 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 SFMBT2Q5VUG0 894 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 HS2ST1Q7LGA3 356 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 HAUS4Q9H6D7 363 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 TMOD4Q9NZQ9 345 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 PLAGL2Q9UPG8 496 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 CCDC169A6NNP5 214 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 MOCS3O95396 460 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 ATP1A1P05023 1023 aaKnown RBP12.23□□□□□ -0.45
TCOF1-203ENST00000394269 TRIM49P0CI25 452 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 TRIM49CP0CI26 452 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 HIRAP54198 1017 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-203ENST00000394269 USP14P54578 494 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 SETQ01105 290 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-203ENST00000394269 COBLL1Q53SF7 1204 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 XKR9Q5GH70 373 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms