RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SETQ01105 290 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 RBM43Q6ZSC3 357 aaKnown RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 DEFB128Q7Z7B8 93 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 KIAA1328Q86T90 577 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 FAM193BQ96PV7 902 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PXMP2Q9NR77 195 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 TOGARAM1Q9Y4F4 1720 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 ZBTB22O15209 634 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 PTPREP23469 700 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 VEGFBP49765 207 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 ACTR2P61160 394 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 CCDC181Q5TID7 509 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 SYT10Q6XYQ8 523 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 C11orf57Q6ZUT1 292 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-205ENST00000392004 SETD4Q9NVD3 440 aa11.32□□□□□ -0.6
COL6A3-205ENST00000392004 TMCO5BA8MYB1 307 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 FKTNO75072 461 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 P4HBP07237 508 aaKnown RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 INHBEP58166 350 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 FKBP1BP68106 108 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 CCL14Q16627 93 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 ARHGAP29Q52LW3 1261 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 SFR1Q86XK3 245 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 AKR1B10O60218 316 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 TUBB4AP04350 444 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 YWHABP31946 246 aaKnown RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 USP11P51784 963 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 PRKCEQ02156 737 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 PRKCZQ05513 592 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 MYO7AQ13402 2215 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 ADAM9Q13443 819 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 ERCC6LQ2NKX8 1250 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 DPCR1Q3MIW9 517 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 PRRC2BQ5JSZ5 2229 aaKnown RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 NYAP1Q6ZVC0 841 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 FAM20AQ96MK3 541 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 RPS6KC1Q96S38 1066 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 XPNPEP3Q9NQH7 507 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 POLR3GO15318 223 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 NOP2P46087 812 aaKnown RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 SEZ6Q53EL9 994 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 LMBRD2Q68DH5 695 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 GOLPH3LQ9H4A5 285 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 PARVGQ9HBI0 331 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 CYP39A1Q9NYL5 469 aa11.31□□□□□ -0.6
COL6A3-205ENST00000392004 NXF1Q9UBU9 619 aaKnown RBP11.31□□□□□ -0.6
COL6A3-205ENST00000392004 SYNRGQ9UMZ2 1314 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 PPP1R11O60927 126 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 MYL5Q02045 173 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 MAPK8IP2Q13387 824 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 KIZQ2M2Z5 673 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 SHC4Q6S5L8 630 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 RNF180Q86T96 592 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 PSPC1Q8WXF1 523 aaKnown RBP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 MKL1Q969V6 931 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 ARHGAP39Q9C0H5 1083 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 HMX1Q9NP08 348 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 BRWD3Q6RI45 1802 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 KDM3BQ7LBC6 1761 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 CYP2C9P11712 490 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 NMT1P30419 496 aaKnown RBP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 RCAN1P53805 252 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 PSMC5P62195 406 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 SPAG1Q07617 926 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 IQCB1Q15051 598 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 PPP1R18Q6NYC8 613 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 ZBTB10Q96DT7 871 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 TINF2Q9BSI4 451 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 BICDL2A1A5D9 508 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 DENND3A2RUS2 1198 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 IGF2BP3O00425 579 aaKnown RBP eCLIP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 ATP9AO75110 1047 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 PRR29P0C7W0 189 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 THPOP40225 353 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 ALDH5A1P51649 535 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-205ENST00000392004 ACVR2BQ13705 512 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 PGM5Q15124 567 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 CST9Q5W186 159 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 USP37Q86T82 979 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 FAM114A1Q8IWE2 563 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 KCNB2Q92953 911 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 SAAL1Q96ER3 474 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 IMPACTQ9P2X3 320 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 RBPJLQ9UBG7 517 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 EXOC7Q9UPT5 735 aa11.3□□□□□ -0.6
COL6A3-205ENST00000392004 VTNP04004 478 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 NR2F2P24468 414 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 JAK3P52333 1124 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 IFNL1Q8IU54 200 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 POLR3FQ9H1D9 316 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-205ENST00000392004 STARD7Q9NQZ5 370 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 GINM1Q9NU53 330 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 FANCLQ9NW38 375 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 MTUS1Q9ULD2 1270 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 PHF20L1A8MW92 1017 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 FGFR4P22455 802 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 NLRP11P59045 1033 aaKnown RBP11.29□□□□□ -0.6
COL6A3-205ENST00000392004 PAGE5Q96GU1 130 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms