RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 DBR1Q9UK59 544 aaKnown RBP27.83■■■□□ 2.05
SHOX2-201ENST00000389589 WDR81Q562E7 1941 aa27.83■■■□□ 2.04
SHOX2-201ENST00000389589 DYNC1I1O14576 645 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 QARSP47897 775 aaKnown RBP27.82■■■□□ 2.04
SHOX2-201ENST00000389589 ZNF131P52739 623 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 ADAM9Q13443 819 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 PLS1Q14651 629 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 MYCT1Q8N699 235 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 CHST13Q8NET6 341 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 PURBQ96QR8 312 aaKnown RBP27.82■■■□□ 2.04
SHOX2-201ENST00000389589 STAM2O75886 525 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 MYBP10242 640 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 ZBED6P86452 979 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 MTF1Q14872 753 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 RDM1Q8NG50 284 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 A1CFQ9NQ94 594 aaKnown RBP27.82■■■□□ 2.04
SHOX2-201ENST00000389589 TYW1Q9NV66 732 aaKnown RBP27.82■■■□□ 2.04
SHOX2-201ENST00000389589 ADGRG1Q9Y653 693 aa27.82■■■□□ 2.04
SHOX2-201ENST00000389589 UBE4BO95155 1302 aa27.81■■■□□ 2.04
SHOX2-201ENST00000389589 UTRNP46939 3433 aa27.81■■■□□ 2.04
SHOX2-201ENST00000389589 NKRFO15226 690 aaKnown RBP eCLIP27.81■■■□□ 2.04
SHOX2-201ENST00000389589 GCNT3O95395 438 aa27.81■■■□□ 2.04
SHOX2-201ENST00000389589 STXBP4Q6ZWJ1 553 aa27.81■■■□□ 2.04
SHOX2-201ENST00000389589 ILDR2Q71H61 639 aa27.81■■■□□ 2.04
SHOX2-201ENST00000389589 ANKRD13AQ8IZ07 590 aa27.81■■■□□ 2.04
SHOX2-201ENST00000389589 PROCA1Q8NCQ7 364 aaPredicted RBP27.81■■■□□ 2.04
SHOX2-201ENST00000389589 ZNF397Q8NF99 534 aaPredicted RBP27.81■■■□□ 2.04
SHOX2-201ENST00000389589 LCTP09848 1927 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 WDR64B1ANS9 1081 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 ERVK-24P63145 666 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 ERO1BQ86YB8 467 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 INPP4AQ96PE3 977 aaPredicted RBP27.8■■■□□ 2.04
SHOX2-201ENST00000389589 FAM184BQ9ULE4 1060 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 SIK3Q9Y2K2 1263 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 PHLPP2Q6ZVD8 1323 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 RASSF10A6NK89 507 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 PRPF6O94906 941 aaKnown RBP27.8■■■□□ 2.04
SHOX2-201ENST00000389589 EPHX2P34913 555 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 HOXD13P35453 343 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 TREML2Q5T2D2 321 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 SYT10Q6XYQ8 523 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 CDCA5Q96FF9 252 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 CDHR1Q96JP9 859 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 DESI2Q9BSY9 194 aa27.8■■■□□ 2.04
SHOX2-201ENST00000389589 NR2F2P24468 414 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 RPL13P26373 211 aaKnown RBP27.79■■■□□ 2.04
SHOX2-201ENST00000389589 TRIM65Q6PJ69 517 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 LBX2Q6XYB7 198 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 TRIM59Q8IWR1 403 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 ZNHIT6Q9NWK9 470 aaKnown RBP27.79■■■□□ 2.04
SHOX2-201ENST00000389589 SCN4AP35499 1836 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 CXCL11O14625 94 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 ATP9AO75110 1047 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 ZNF746Q6NUN9 644 aaPredicted RBP27.79■■■□□ 2.04
SHOX2-201ENST00000389589 SENP7Q9BQF6 1050 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 ELP3Q9H9T3 547 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.79■■■□□ 2.04
SHOX2-201ENST00000389589 FBXO40Q9UH90 709 aa27.79■■■□□ 2.04
SHOX2-201ENST00000389589 ZC3H4Q9UPT8 1303 aaKnown RBP27.78■■■□□ 2.04
SHOX2-201ENST00000389589 A0A0G2JLL6 359 aaPredicted RBP27.78■■■□□ 2.04
SHOX2-201ENST00000389589 SFI1A8K8P3 1242 aa27.78■■■□□ 2.04
SHOX2-201ENST00000389589 KLK7P49862 253 aa27.78■■■□□ 2.04
SHOX2-201ENST00000389589 PADI6Q6TGC4 694 aa27.78■■■□□ 2.04
SHOX2-201ENST00000389589 PRRT2Q7Z6L0 340 aaPredicted RBP27.78■■■□□ 2.04
SHOX2-201ENST00000389589 C4orf19Q8IY42 314 aa27.78■■■□□ 2.04
SHOX2-201ENST00000389589 CNKSR2Q8WXI2 1034 aa27.78■■■□□ 2.04
SHOX2-201ENST00000389589 PSMC5P62195 406 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 MEA1Q16626 185 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 GADL1Q6ZQY3 521 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 FRMD5Q7Z6J6 570 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 IWS1Q96ST2 819 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 UTP18Q9Y5J1 556 aaKnown RBP eCLIP27.77■■■□□ 2.04
SHOX2-201ENST00000389589 FAM178BQ8IXR5 827 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 EDEM3Q9BZQ6 932 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 AGPAT5Q9NUQ2 364 aa27.77■■■□□ 2.04
SHOX2-201ENST00000389589 SPDYE5A6NIY4 337 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 PPP2R3AQ06190 1150 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 NFIL3Q16649 462 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 ZNF720Q7Z2F6 126 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 DNERQ8NFT8 737 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 TIPINQ9BVW5 301 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 POLD4Q9HCU8 107 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 PFASO15067 1338 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 IRF6O14896 467 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 RARRES1P49788 294 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 GNPTABQ3T906 1256 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 ODR4Q5SWX8 454 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 RIOX2Q8IUF8 465 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 OTUD5Q96G74 571 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 MOV10L1Q9BXT6 1211 aaKnown RBP27.76■■■□□ 2.03
SHOX2-201ENST00000389589 PCDHB13Q9Y5F0 798 aa27.76■■■□□ 2.03
SHOX2-201ENST00000389589 ASTN1O14525 1302 aa27.75■■■□□ 2.03
SHOX2-201ENST00000389589 NFASCO94856 1347 aa27.75■■■□□ 2.03
SHOX2-201ENST00000389589 SLC16A3O15427 465 aaKnown RBP27.75■■■□□ 2.03
SHOX2-201ENST00000389589 HIP1RO75146 1068 aa27.75■■■□□ 2.03
SHOX2-201ENST00000389589 CCNE2O96020 404 aa27.75■■■□□ 2.03
SHOX2-201ENST00000389589 NMT1P30419 496 aaKnown RBP27.75■■■□□ 2.03
SHOX2-201ENST00000389589 YWHABP31946 246 aaKnown RBP27.75■■■□□ 2.03
SHOX2-201ENST00000389589 CCDC43Q96MW1 224 aaKnown RBP27.75■■■□□ 2.03
SHOX2-201ENST00000389589 FIZ1Q96SL8 496 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms