RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 PDCLQ13371 301 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 HIBCHQ6NVY1 386 aaPredicted RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 ARHGEF3Q9NR81 526 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 USP40Q9NVE5 1235 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 MAPK13O15264 365 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 SYNCRIPO60506 623 aaKnown RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 VCAM1P19320 739 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 SNX30Q5VWJ9 437 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 ANO5Q75V66 913 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 PYROXD1Q8WU10 500 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 DEPDC1BQ8WUY9 529 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 MAML1Q92585 1016 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 YIPF2Q9BWQ6 316 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 CNOT10Q9H9A5 744 aaKnown RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 GON4LQ3T8J9 2241 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 GOLGA8JA6NMD2 632 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 STAT2P52630 851 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 STXBP2Q15833 593 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 C6orf118Q5T5N4 469 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 TTC8Q8TAM2 541 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 IFT43Q96FT9 208 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 PSD3Q9NYI0 1048 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 PPARGC1AQ9UBK2 798 aaKnown RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 TRIM33Q9UPN9 1127 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 CFAP74Q9C0B2 1584 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 KCNJ18B7U540 433 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 GPAA1O43292 621 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 RAPGEF3O95398 923 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 KCNA2P16389 499 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 NFX1Q12986 1120 aaKnown RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 KCNJ12Q14500 433 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 FAM133BQ5BKY9 247 aaKnown RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 RWDD4Q6NW29 188 aaKnown RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 PANK4Q9NVE7 773 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 PCDHA1Q9Y5I3 950 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 NKTRP30414 1462 aaKnown RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 TADA3O75528 432 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 RALBP11234 206 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 TMPRSS15P98073 1019 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 LVRNQ6Q4G3 990 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 CENPUQ71F23 418 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 ZNF215Q9UL58 517 aaPredicted RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 TRAF3IP3Q9Y228 551 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 MRFAP1Q9Y605 127 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 DEFA1P59665 94 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 DEFA3P59666 94 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 MTFR1Q15390 333 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 POTEEQ6S8J3 1075 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 LUZP2Q86TE4 346 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 APLFQ8IW19 511 aaPredicted RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 THEM5Q8N1Q8 247 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 INPP5DQ92835 1189 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 L3MBTL3Q96JM7 780 aaPredicted RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 MYLK2Q9H1R3 596 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 BLZF1Q9H2G9 400 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 TEX14Q8IWB6 1497 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 RASSF9O75901 435 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 MOCS3O95396 460 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 TIMM10P62072 90 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 DYNLT1P63172 113 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 PKN3Q6P5Z2 889 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 TRMT44Q8IYL2 757 aaKnown RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 DEPDC7Q96QD5 511 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 CCT7Q99832 543 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 FSD1LQ9BXM9 530 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 MTIF3Q9H2K0 278 aaKnown RBP11.38□□□□□ -0.59
RTN3-206ENST00000377819 GTSE1Q9NYZ3 720 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 SEL1LQ9UBV2 794 aa11.38□□□□□ -0.59
RTN3-206ENST00000377819 CCDC142Q17RM4 750 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 KCTD16Q68DU8 428 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 CC2D1AQ6P1N0 951 aaPredicted RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 YAF2Q8IY57 180 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 SARS2Q9NP81 518 aaKnown RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 NGRNQ9NPE2 291 aaKnown RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 STOML1Q9UBI4 398 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 PAIP2BQ9ULR5 123 aaKnown RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 ZMYND8Q9ULU4 1186 aaPredicted RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 ATP8A1Q9Y2Q0 1164 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 PI4K2BG5E9Z4 385 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 PDE8AO60658 829 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 OSBPP22059 807 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 LRRC74AQ0VAA2 488 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 TBL3Q12788 808 aaKnown RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 TFDP2Q14188 446 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 EFTUD2Q15029 972 aaKnown RBP eCLIP11.37□□□□□ -0.593e-9■■■■□ 23.3
RTN3-206ENST00000377819 FGD2Q7Z6J4 655 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 ANKRD13CQ8N6S4 541 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 TGFBRAP1Q8WUH2 860 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 DCAF5Q96JK2 942 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 STRIP2Q9ULQ0 834 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 EPN1Q9Y6I3 576 aaPredicted RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 PRDM15P57071 1507 aaPredicted RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 SPDYE5A6NIY4 337 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 DNAJC6O75061 913 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 MYL7Q01449 175 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 SPDYE7PQ495Y7 208 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 ACCSLQ4AC99 568 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 USP39Q53GS9 565 aaKnown RBP11.37□□□□□ -0.59
RTN3-206ENST00000377819 ARHGAP27Q6ZUM4 889 aa11.37□□□□□ -0.59
RTN3-206ENST00000377819 MFN1Q8IWA4 741 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms