RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 NRKQ7Z2Y5 1582 aa6.08□□□□□ -1.44
USP48-202ENST00000374730 LRRC7Q96NW7 1537 aa6.08□□□□□ -1.44
USP48-202ENST00000374730 RIMS1Q86UR5 1692 aaKnown RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 KLF4O43474 513 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 FOXD2O60548 495 aaPredicted RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 C8BP07358 591 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 CT47B1P0C2W7 299 aaPredicted RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 BCL6P41182 706 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 PPP2R2AP63151 447 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 SF1Q15637 639 aaKnown RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 PRSS53Q2L4Q9 553 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 CEP68Q76N32 757 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 HDGFL2Q7Z4V5 671 aaPredicted RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 TCP11L2Q8N4U5 519 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 CELF2-AS1Q8N7Q2 184 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 LINC00482Q8N8I6 264 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 SYT8Q8NBV8 401 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 RCBTB1Q8NDN9 531 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.07□□□□□ -1.44
USP48-202ENST00000374730 ZNF526Q8TF50 670 aaPredicted RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 FBXO41Q8TF61 875 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 TRMT2BQ96GJ1 504 aaKnown RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 SGSM3Q96HU1 749 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 COA3Q9Y2R0 106 aaPredicted RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 NOP58Q9Y2X3 529 aaKnown RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 NPFFR2Q9Y5X5 522 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 NALCNQ8IZF0 1738 aa6.07□□□□□ -1.44
USP48-202ENST00000374730 CDK12Q9NYV4 1490 aaPredicted RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 CPSF1Q10570 1443 aaKnown RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 EDC4Q6P2E9 1401 aaKnown RBP6.07□□□□□ -1.44
USP48-202ENST00000374730 ZMYM3Q14202 1370 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 TNRQ92752 1358 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 DLG5Q8TDM6 1919 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 A0A1W2PQU0 124 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 FYB1O15117 783 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 SAFB2Q14151 953 aaKnown RBP eCLIP6.06□□□□□ -1.44
USP48-202ENST00000374730 CHRNA2Q15822 529 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 DENND5AQ6IQ26 1287 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 ZC3H18Q86VM9 953 aaKnown RBP6.06□□□□□ -1.44
USP48-202ENST00000374730 FAM126BQ8IXS8 530 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 CARFQ8N187 725 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 KCTD13Q8WZ19 329 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 IPO9Q96P70 1041 aaKnown RBP6.06□□□□□ -1.44
USP48-202ENST00000374730 NOX5Q96PH1 765 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 CDK19Q9BWU1 502 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 MYH16Q9H6N6 1097 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 NGRNQ9NPE2 291 aaKnown RBP6.06□□□□□ -1.44
USP48-202ENST00000374730 NTMQ9P121 344 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 USP35Q9P2H5 1018 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 PALD1Q9ULE6 856 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 ZNF652Q9Y2D9 606 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 FER1L4A9Z1Z3 1794 aa6.06□□□□□ -1.44
USP48-202ENST00000374730 IL16Q14005 1332 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 A0A1B0GTL3 188 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 BCAR3O75815 825 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 TNNT2P45379 298 aaPredicted RBP6.05□□□□□ -1.44
USP48-202ENST00000374730 LSAMPQ13449 338 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 EMC4Q5J8M3 183 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 TTLL7Q6ZT98 887 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 ZDHHC14Q8IZN3 488 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 ST13P5Q8NFI4 369 aaPredicted RBP6.05□□□□□ -1.44
USP48-202ENST00000374730 PLEKHF1Q96S99 279 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 GORASP1Q9BQQ3 440 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 SPATA25Q9BR10 227 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 FBXL7Q9UJT9 491 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 DIP2AQ14689 1571 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.05□□□□□ -1.44
USP48-202ENST00000374730 AATKQ6ZMQ8 1374 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 TMEM2Q9UHN6 1383 aa6.05□□□□□ -1.44
USP48-202ENST00000374730 SLIT1O75093 1534 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 IQCA1LA6NCM1 817 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 SMARCA5O60264 1052 aaPredicted RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 U2AF1L5P0DN76 240 aaPredicted RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 RARSP54136 660 aaKnown RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 U2AF1Q01081 240 aaKnown RBP eCLIP6.04□□□□□ -1.442e-10■■■■□ 21.9
USP48-202ENST00000374730 HSP90AA2PQ14568 343 aaPredicted RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 ZFYVE27Q5T4F4 411 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 MILR1Q7Z6M3 343 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 ADGRG2Q8IZP9 1017 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 ZBTB8AQ96BR9 441 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 DDX11Q96FC9 970 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 C11orf84Q9BUA3 381 aaPredicted RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 PNNQ9H307 717 aaKnown RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 EPB41L1Q9H4G0 881 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 ST7Q9NRC1 585 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 GPR27Q9NS67 375 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 SPATA6Q9NWH7 488 aaPredicted RBP6.04□□□□□ -1.44
USP48-202ENST00000374730 PCDHA2Q9Y5H9 948 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 PPIP5K1Q6PFW1 1433 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 ADAMTS13Q76LX8 1427 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 FMN2Q9NZ56 1722 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 METP08581 1390 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 PLEKHG1Q9ULL1 1385 aa6.04□□□□□ -1.44
USP48-202ENST00000374730 ARHGAP23Q9P227 1491 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 MAPK8IP3Q9UPT6 1336 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 XRN1Q8IZH2 1706 aaKnown RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 HGSO14964 777 aaPredicted RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 DIAPH1O60610 1272 aaKnown RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 LCP1P13796 627 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 THBS2P35442 1172 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms