RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ASIC1P78348 528 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 L1TD1Q5T7N2 865 aaKnown RBP22.17■■□□□ 1.14
CLN3-205ENST00000359984 ERO1AQ96HE7 468 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 PCYT2Q99447 389 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 ZNF302Q9NR11 478 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 IGSF9BQ9UPX0 1349 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 GOLGA6L3A6NEY3 463 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 DKC1O60832 514 aaKnown RBP eCLIP22.17■■□□□ 1.14
CLN3-205ENST00000359984 STBD1O95210 358 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 XRCC6P12956 609 aaKnown RBP eCLIP22.17■■□□□ 1.14
CLN3-205ENST00000359984 YWHABP31946 246 aaKnown RBP22.17■■□□□ 1.14
CLN3-205ENST00000359984 TNFAIP2Q03169 654 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 MORC3Q14149 939 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 EMID1Q96A84 441 aaPredicted RBP22.17■■□□□ 1.14
CLN3-205ENST00000359984 DNAJC19Q96DA6 116 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 ANO10Q9NW15 660 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 TSKSQ9UJT2 592 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 DBR1Q9UK59 544 aaKnown RBP22.17■■□□□ 1.14
CLN3-205ENST00000359984 MAFBQ9Y5Q3 323 aaPredicted RBP22.17■■□□□ 1.14
CLN3-205ENST00000359984 NPHP3-ACAD11A0A0J9YXS1 232 aa22.16■■□□□ 1.14
CLN3-205ENST00000359984 NKRFO15226 690 aaKnown RBP eCLIP22.16■■□□□ 1.14
CLN3-205ENST00000359984 DPCR1Q3MIW9 517 aa22.16■■□□□ 1.14
CLN3-205ENST00000359984 ANO6Q4KMQ2 910 aa22.16■■□□□ 1.14
CLN3-205ENST00000359984 MFSD14CQ5VZR4 134 aa22.16■■□□□ 1.14
CLN3-205ENST00000359984 TRMT1LQ7Z2T5 733 aaKnown RBP22.16■■□□□ 1.14
CLN3-205ENST00000359984 TRIML1Q8N9V2 468 aa22.16■■□□□ 1.14
CLN3-205ENST00000359984 RUSC1Q9BVN2 902 aa22.16■■□□□ 1.14
CLN3-205ENST00000359984 BMP2KQ9NSY1 1161 aaPredicted RBP22.16■■□□□ 1.14
CLN3-205ENST00000359984 TMEM150BA6NC51 233 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 ATP4AP20648 1035 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 KMT5BQ4FZB7 885 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 RINT1Q6NUQ1 792 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 BEGAINQ9BUH8 593 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 DNAJC25Q9H1X3 360 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 ANKEF1Q9NU02 776 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 LGR5O75473 907 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 GNRH1P01148 92 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 RARRES1P49788 294 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 PRKCEQ02156 737 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 KCNB1Q14721 858 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 UTP14CQ5TAP6 766 aaKnown RBP22.15■■□□□ 1.14
CLN3-205ENST00000359984 ANO5Q75V66 913 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 TRMT44Q8IYL2 757 aaKnown RBP22.15■■□□□ 1.14
CLN3-205ENST00000359984 TRPV1Q8NER1 839 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 PPTC7Q8NI37 304 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 AFAP1L1Q8TED9 768 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 AFG1LQ8WV93 481 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 RMND1Q9NWS8 449 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 NRBP1Q9UHY1 535 aa22.15■■□□□ 1.14
CLN3-205ENST00000359984 PVALEFA0A1B0GWK0 134 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 ARHGEF35A5YM69 484 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 STAT5BP51692 787 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 RAD51AP2Q09MP3 1159 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 FAM160B1Q5W0V3 765 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 C11orf57Q6ZUT1 292 aaPredicted RBP22.14■■□□□ 1.13
CLN3-205ENST00000359984 C1orf186Q6ZWK4 172 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 RBSNQ9H1K0 784 aa22.14■■□□□ 1.13
CLN3-205ENST00000359984 GNEQ9Y223 722 aaKnown RBP22.14■■□□□ 1.13
CLN3-205ENST00000359984 TRIM32Q13049 653 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 GIT2Q14161 759 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 PLA2G4FQ68DD2 849 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 UNC13DQ70J99 1090 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 OR6J1Q8NGC5 347 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 SH2D3AQ9BRG2 576 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 AZI2Q9H6S1 392 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 FAM184BQ9ULE4 1060 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 WDR81Q562E7 1941 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 RHOBTB3O94955 611 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 KRT18P05783 430 aaKnown RBP22.13■■□□□ 1.13
CLN3-205ENST00000359984 CYBAP13498 195 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 IDEP14735 1019 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 ELNP15502 786 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 NPEPPSP55786 919 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 CACNB1Q02641 598 aaPredicted RBP22.13■■□□□ 1.13
CLN3-205ENST00000359984 XKR3Q5GH77 459 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 OTUD6AQ7L8S5 288 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 TRIM50Q86XT4 487 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 DNAJC5GQ8N7S2 189 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 WBP1LQ9NX94 342 aa22.13■■□□□ 1.13
CLN3-205ENST00000359984 CASP8AP2Q9UKL3 1982 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 DYNC1LI2O43237 492 aaPredicted RBP22.12■■□□□ 1.13
CLN3-205ENST00000359984 ARHGEF6Q15052 776 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 XKR9Q5GH70 373 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 PADI6Q6TGC4 694 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 CCDC47Q96A33 483 aaKnown RBP22.12■■□□□ 1.13
CLN3-205ENST00000359984 LENG1Q96BZ8 264 aaPredicted RBP22.12■■□□□ 1.13
CLN3-205ENST00000359984 REEP2Q9BRK0 252 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 EXOC1Q9NV70 894 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 EMSYQ7Z589 1322 aa22.12■■□□□ 1.13
CLN3-205ENST00000359984 ADCY3O60266 1144 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 OATP04181 439 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 ZNF658Q5TYW1 1059 aaPredicted RBP22.11■■□□□ 1.13
CLN3-205ENST00000359984 PLPPR4Q7Z2D5 763 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 GLG1Q92896 1179 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 PANK4Q9NVE7 773 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 KCND2Q9NZV8 630 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 CACNB2Q08289 660 aaPredicted RBP22.11■■□□□ 1.13
CLN3-205ENST00000359984 EHHADHQ08426 723 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 SMYD4Q8IYR2 804 aaPredicted RBP22.11■■□□□ 1.13
CLN3-205ENST00000359984 MLKLQ8NB16 471 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms