RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TBC1D10CQ8IV04 446 aa21.02■□□□□ 0.95
CCDC88B-202ENST00000356786 MCUQ8NE86 351 aa21.02■□□□□ 0.95
CCDC88B-202ENST00000356786 ZNF473Q8WTR7 871 aaKnown RBP21.02■□□□□ 0.95
CCDC88B-202ENST00000356786 HAUS2Q9NVX0 235 aa21.02■□□□□ 0.95
CCDC88B-202ENST00000356786 TMOD4Q9NZQ9 345 aa21.02■□□□□ 0.95
CCDC88B-202ENST00000356786 DIS3Q9Y2L1 958 aaKnown RBP21.02■□□□□ 0.95
CCDC88B-202ENST00000356786 LRRIQ4A6NIV6 560 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 ZNF185O15231 689 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 ALAS1P13196 640 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 HOXA7P31268 230 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 EPM2AIP1Q7L775 607 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 CCDC138Q96M89 665 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 CALN1Q9BXU9 219 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 ANKFY1Q9P2R3 1169 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 SNX12Q9UMY4 172 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 GOLGA8QA0A0J9YX86 632 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 GOLGA8OA6NCC3 632 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 GOLGA8NF8WBI6 632 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 IRAK1P51617 712 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 PPP4R3CPQ6ZMV5 832 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 DCTN4Q9UJW0 460 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 ZBTB12Q9Y330 459 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 DRP2Q13474 957 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 PCGF5Q86SE9 256 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 IL17RAQ96F46 866 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 NUDCD1Q96RS6 583 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 EEF1B2P24534 225 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 PDE6BP35913 854 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 ZNF211Q13398 564 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 CERKLQ49MI3 558 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 CCNI2Q6ZMN8 369 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 RIOK1Q9BRS2 568 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 PICK1Q9NRD5 415 aa21.01■□□□□ 0.95
CCDC88B-202ENST00000356786 TULP4Q9NRJ4 1543 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 GRID2IPA4D2P6 1211 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 EPHA10Q5JZY3 1008 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 PDZD4Q76G19 769 aaPredicted RBP21■□□□□ 0.95
CCDC88B-202ENST00000356786 BUD13Q9BRD0 619 aaKnown RBP eCLIP21■□□□□ 0.955e-7■□□□□ 11.2
CCDC88B-202ENST00000356786 KIF28PB7ZC32 967 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 IPO5O00410 1097 aaKnown RBP21■□□□□ 0.95
CCDC88B-202ENST00000356786 TMPRSS15P98073 1019 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 ATG16L1Q676U5 607 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 STK36Q9NRP7 1315 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 CA8P35219 290 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 TGS1Q96RS0 853 aaKnown RBP21■□□□□ 0.95
CCDC88B-202ENST00000356786 ALDH8A1Q9H2A2 487 aaPredicted RBP21■□□□□ 0.95
CCDC88B-202ENST00000356786 SUGCTQ9HAC7 445 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 SLC4A7Q9Y6M7 1214 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 IQANK1A0A1B0GTG1 560 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 CAPN9O14815 690 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 HAUS5O94927 633 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 STX1BP61266 288 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 ART3Q13508 389 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 DNAJC24Q6P3W2 148 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 RSBN1LQ6PCB5 846 aaPredicted RBP21■□□□□ 0.95
CCDC88B-202ENST00000356786 CYB5R4Q7L1T6 521 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 ACCSQ96QU6 501 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 SH3GL3Q99963 347 aa21■□□□□ 0.95
CCDC88B-202ENST00000356786 A0A1W2PQC6 194 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 RASSF10A6NK89 507 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 ACTN1P12814 892 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 CDC27P30260 824 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 CDR2Q01850 454 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 CCDC117Q8IWD4 279 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 SERPINI1Q99574 410 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 PARVGQ9HBI0 331 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 SLC16A2P36021 539 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 CORO7P57737 925 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 DYNC1I2Q13409 638 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 ZBTB8OSQ8IWT0 167 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 MB21D2Q8IYB1 491 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 DNAJC12Q9UKB3 198 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 A6NJR5 290 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 HAUS8Q9BT25 410 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 PLA2G4AP47712 749 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 CRLF3Q8IUI8 442 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 TTC1Q99614 292 aa20.99■□□□□ 0.95
CCDC88B-202ENST00000356786 A0A1B0GTH6 734 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 UBXN2AP68543 259 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 C1orf146Q5VVC0 180 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 DARS2Q6PI48 645 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 RASGRP2Q7LDG7 609 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 WDR75Q8IWA0 830 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 AMACRQ9UHK6 382 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 HPCAL4Q9UM19 191 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 CAPN11Q9UMQ6 739 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 ENO4A6NNW6 628 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 DIAPH2O60879 1101 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 RANBP1P43487 201 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 RAD9BQ6WBX8 426 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 NACC1Q96RE7 527 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 FXR1P51114 621 aaKnown RBP eCLIP20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 IL1RL1Q01638 556 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 TC2NQ8N9U0 490 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 SEC31BQ9NQW1 1179 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 GGT7Q9UJ14 662 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 WDR17Q8IZU2 1322 aa20.98■□□□□ 0.95
CCDC88B-202ENST00000356786 RASGRF1Q13972 1273 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 NOA1Q8NC60 698 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 LAMC1P11047 1609 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms