RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 EIF4A3P38919 411 aaKnown RBP16.16■□□□□ 0.18
COL17A1-201ENST00000353479 RHPN2Q8IUC4 686 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 HAUS1Q96CS2 278 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 SOWAHDA6NJG2 315 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 C19orf81C9J6K1 198 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 CRCPO75575 148 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 LDHAP00338 332 aaKnown RBP16.16■□□□□ 0.18
COL17A1-201ENST00000353479 CCDC121Q6ZUS5 278 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 SLC35F6Q8N357 371 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 MB21D1Q8N884 522 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 AFAP1L1Q8TED9 768 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 WDR70Q9NW82 654 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 TAF6LQ9Y6J9 622 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 RICTORQ6R327 1708 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 COPB2P35606 906 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 ATP2C1P98194 919 aaPredicted RBP16.16■□□□□ 0.18
COL17A1-201ENST00000353479 RUFY4Q6ZNE9 571 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 ACRBPQ8NEB7 543 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 HEXIM2Q96MH2 286 aaKnown RBP16.16■□□□□ 0.18
COL17A1-201ENST00000353479 FAM205CA6NFA0 338 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 MED7O43513 233 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 NR3C1P04150 777 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 PDHBP11177 359 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 PRCPP42785 496 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 PHKA2P46019 1235 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 MTMR3Q13615 1198 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 CEP55Q53EZ4 464 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 DENND2CQ68D51 928 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 AGBL3Q8NEM8 1001 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 PSPC1Q8WXF1 523 aaKnown RBP16.16■□□□□ 0.18
COL17A1-201ENST00000353479 TEX13BQ9BXU2 312 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 VCPKMTQ9H867 229 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 PRR12Q9ULL5 1215 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 ZNF148Q9UQR1 794 aa16.16■□□□□ 0.18
COL17A1-201ENST00000353479 DENND3A2RUS2 1198 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 GOLGA6CA6NDK9 693 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 GOLGA6DP0CG33 693 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 INTS8Q75QN2 995 aaKnown RBP16.15■□□□□ 0.18
COL17A1-201ENST00000353479 CTAGE3PQ8IX95 158 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 NHEJ1Q9H9Q4 299 aaPredicted RBP16.15■□□□□ 0.18
COL17A1-201ENST00000353479 SPTLC3Q9NUV7 552 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 GOLGA6AQ9NYA3 693 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 CCDC6Q16204 474 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 MAP7D3Q8IWC1 876 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 PALM2Q8IXS6 379 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 PVALEFA0A1B0GWK0 134 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 BAATQ14032 418 aaPredicted RBP16.15■□□□□ 0.18
COL17A1-201ENST00000353479 LGSNQ5TDP6 509 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 TAOK1Q7L7X3 1001 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 PHF20Q9BVI0 1012 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 RFX6Q8HWS3 928 aa16.15■□□□□ 0.18
COL17A1-201ENST00000353479 TNS2Q63HR2 1409 aa16.14■□□□□ 0.18
COL17A1-201ENST00000353479 ASB14A6NK59 587 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 EBAG9O00559 213 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 TNPO2O14787 897 aaKnown RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 PPP2R5CQ13362 524 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SHC4Q6S5L8 630 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 DSTYKQ6XUX3 929 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SLC9A2Q9UBY0 812 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 COL3A1P02461 1466 aaPredicted RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 H7C0C1 242 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SRGNP10124 158 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 ATP5OP48047 213 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SARNPP82979 210 aaKnown RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SETDB1Q15047 1291 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 PPP2R5EQ16537 467 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 ZNF568Q3ZCX4 644 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 XXYLT1Q8NBI6 393 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 CCT6BQ92526 530 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 KRT12Q99456 494 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 HINFPQ9BQA5 517 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 POLR3FQ9H1D9 316 aaPredicted RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 OGFRQ9NZT2 677 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SERPING1P05155 500 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 ZNF157P51786 506 aaPredicted RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 TAF1CQ15572 869 aaPredicted RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 MFSD14CQ5VZR4 134 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 DNAJC24Q6P3W2 148 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 FAM213AQ9BRX8 229 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 ARHGAP23Q9P227 1491 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 SNAPC2Q13487 334 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 KRT71Q3SY84 523 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 OR6B2Q6IFH4 312 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 RINT1Q6NUQ1 792 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 ZDHHC9Q9Y397 364 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 BCL9O00512 1426 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 HOXD10P28358 340 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 TWF2Q6IBS0 349 aaKnown RBP16.14■□□□□ 0.17
COL17A1-201ENST00000353479 LRRC4Q9HBW1 653 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 PCDHA10Q9Y5I2 948 aa16.14■□□□□ 0.17
COL17A1-201ENST00000353479 MROH1Q8NDA8 1641 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 CAPN12Q6ZSI9 719 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 CROCCP2Q86T23 111 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 TXNRD3Q86VQ6 643 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 ERCC6LQ2NKX8 1250 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 MTFR1LQ9H019 292 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 INPP5FQ9Y2H2 1132 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 TXNP10599 105 aaKnown RBP16.13■□□□□ 0.17
COL17A1-201ENST00000353479 GCLMP48507 274 aa16.13■□□□□ 0.17
COL17A1-201ENST00000353479 LLGL1Q15334 1064 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms