RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MMGT1Q8N4V1 131 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 ACBD3Q9H3P7 528 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 ADAMTS1Q9UHI8 967 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 SFI1A8K8P3 1242 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 NR3C1P04150 777 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 ITIH3Q06033 890 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 KCNA1Q09470 495 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 TRAF1Q13077 416 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 CCDC181Q5TID7 509 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 LRCH2Q5VUJ6 765 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 GSPT2Q8IYD1 628 aaKnown RBP23.92■■□□□ 1.42
SHMT1-202ENST00000352886 HSD17B14Q9BPX1 270 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 SMARCAL1Q9NZC9 954 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 ZBTB21Q9ULJ3 1066 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 GCOM1H8Y6P7 765 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-202ENST00000352886 POLR2MP0CAP2 368 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 MYBL2P10244 700 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 UBXN2AP68543 259 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 HSP90B2PQ58FF3 399 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 TPH2Q8IWU9 490 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 EHD2Q9NZN4 543 aa23.92■■□□□ 1.42
SHMT1-202ENST00000352886 CCDC66A2RUB6 948 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 CCNI2Q6ZMN8 369 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-202ENST00000352886 DYDC2Q96IM9 177 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 GDAP1L1Q96MZ0 367 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 VIPAS39Q9H9C1 493 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-202ENST00000352886 ZNF70Q9UC06 446 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-202ENST00000352886 FAN1Q9Y2M0 1017 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 PSMD10O75832 226 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 SLITRK3O94933 977 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 KLRC1P26715 233 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 MATR3P43243 847 aaKnown RBP eCLIP23.91■■□□□ 1.42
SHMT1-202ENST00000352886 CASP4P49662 377 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 ZYXQ15942 572 aaKnown RBP23.91■■□□□ 1.42
SHMT1-202ENST00000352886 EXOC3L4Q17RC7 722 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 TCERG1LQ5VWI1 586 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 DPY19L2P1Q6NXN4 242 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 RSBN1LQ6PCB5 846 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-202ENST00000352886 FAM151AQ8WW52 585 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 EXOC4Q96A65 974 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 HINFPQ9BQA5 517 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 TUFT1Q9NNX1 390 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 PLCB1Q9NQ66 1216 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 OLFML3Q9NRN5 406 aa23.91■■□□□ 1.42
SHMT1-202ENST00000352886 RBBP6Q7Z6E9 1792 aaKnown RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 CLIC2O15247 247 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 RAD17O75943 681 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 UCHL3P15374 230 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 RPL13P26373 211 aaKnown RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 POLD1P28340 1107 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 NAB2Q15742 525 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 EZH2Q15910 746 aaKnown RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 SAMD1Q6SPF0 538 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 LRRC1Q9BTT6 524 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 RANBP17Q9H2T7 1088 aaKnown RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 PALMO75781 387 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 EPB41P11171 864 aaKnown RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 PON1P27169 355 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 DLGAP5Q15398 846 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 KIAA0753Q2KHM9 967 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 KCTD17Q8N5Z5 321 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 HDAC7Q8WUI4 952 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 ZFP91Q96JP5 570 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-202ENST00000352886 SPAG5Q96R06 1193 aa23.9■■□□□ 1.42
SHMT1-202ENST00000352886 ZBTB39O15060 712 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 FAM13AO94988 1023 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 GAP43P17677 238 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 PAFAH1B1P43034 410 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 PPP2R5CQ13362 524 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 FAM71BQ8TC56 605 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 SLC5A5Q92911 643 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 PACSIN1Q9BY11 444 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 METTL14Q9HCE5 456 aaKnown RBP23.89■■□□□ 1.42
SHMT1-202ENST00000352886 TSKSQ9UJT2 592 aa23.89■■□□□ 1.42
SHMT1-202ENST00000352886 SLC16A3O15427 465 aaKnown RBP23.89■■□□□ 1.41
SHMT1-202ENST00000352886 PHACTR2O75167 634 aa23.89■■□□□ 1.41
SHMT1-202ENST00000352886 PTK2Q05397 1052 aa23.89■■□□□ 1.41
SHMT1-202ENST00000352886 CHURC1Q8WUH1 139 aa23.89■■□□□ 1.41
SHMT1-202ENST00000352886 MED4Q9NPJ6 270 aa23.89■■□□□ 1.41
SHMT1-202ENST00000352886 HPCAL4Q9UM19 191 aa23.89■■□□□ 1.41
SHMT1-202ENST00000352886 CNTNAP1P78357 1384 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 GAS7O60861 476 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 C1orf186Q6ZWK4 172 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 IRF2BP2Q7Z5L9 587 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 CDAN1Q8IWY9 1227 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 MYCT1Q8N699 235 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 SELENOOQ9BVL4 669 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 PCDHB13Q9Y5F0 798 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 TNS1Q9HBL0 1735 aaKnown RBP23.88■■□□□ 1.41
SHMT1-202ENST00000352886 TGFB1I1O43294 461 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 NMT1P30419 496 aaKnown RBP23.88■■□□□ 1.41
SHMT1-202ENST00000352886 EPHA7Q15375 998 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 TEX2Q8IWB9 1127 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 SLC35C1Q96A29 364 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 VEZTQ9HBM0 779 aa23.88■■□□□ 1.41
SHMT1-202ENST00000352886 DMGDHQ9UI17 866 aaKnown RBP23.88■■□□□ 1.41
SHMT1-202ENST00000352886 LMAN1P49257 510 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 PRELPP51888 382 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 MRPS25P82663 173 aaKnown RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms