RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SETD3Q86TU7 594 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 FSIP1Q8NA03 581 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 AFAP1L1Q8TED9 768 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 OTUD5Q96G74 571 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RPF1Q9H9Y2 349 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 PODXLO00592 558 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RCSD1Q6JBY9 416 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CMTR1Q8N1G2 835 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 LRRC8CQ8TDW0 803 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 HPS3Q969F9 1004 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 OSBPL9Q96SU4 736 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 AASDHPPTQ9NRN7 309 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SEPT3Q9UH03 358 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 AKT3Q9Y243 479 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CFAP73A6NFT4 308 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 WDR46O15213 610 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RECQLP46063 649 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MTIF2P46199 727 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SURF1Q15526 300 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ZBTB8OSQ8IWT0 167 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 IFNL3Q8IZI9 196 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RIN3Q8TB24 985 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC127Q96BQ5 260 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MMP19Q99542 508 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CARD6Q9BX69 1037 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MRPS26Q9BYN8 205 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CEP44Q9C0F1 390 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 STARD7Q9NQZ5 370 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 IRS2Q9Y4H2 1338 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MFAP3LO75121 409 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ALDH1A2O94788 518 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 S100BP04271 92 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 EEF1GP26641 437 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RXRGP48443 463 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RAP1GDS1P52306 607 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 GNG11P61952 73 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CDC42EP1Q00587 391 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 KCNH2Q12809 1159 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TTLL4Q14679 1199 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 KCNV1Q6PIU1 500 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 LRRC69Q6ZNQ3 347 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 PRR23CQ6ZRP0 262 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RMDN1Q96DB5 314 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 OXCT2Q9BYC2 517 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RIC8AQ9NPQ8 531 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ST7Q9NRC1 585 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ATG3Q9NT62 314 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 USP40Q9NVE5 1235 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 NOB1Q9ULX3 412 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM33Q9UPN9 1127 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 AP3M1Q9Y2T2 418 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MAP3K2Q9Y2U5 619 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ADAMTS7Q9UKP4 1686 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 PALLDQ8WX93 1383 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TRAPPC3O43617 180 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 AMHP03971 560 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 INPP1P49441 399 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 DEFA1P59665 94 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 DEFA3P59666 94 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MYL5Q02045 173 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 LETM2Q2VYF4 491 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ALS2CLQ60I27 953 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CHMP6Q96FZ7 201 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RNPC3Q96LT9 517 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 LGR6Q9HBX8 967 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ECHDC1Q9NTX5 307 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 STK17AQ9UEE5 414 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SCOCQ9UIL1 159 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 PCDHB11Q9Y5F2 797 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 PPP2R3BQ9Y5P8 575 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MAP3K15Q6ZN16 1313 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MROH5Q6ZUA9 1318 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 NUMA1Q14980 2115 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM75PA6NK02 468 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TXNDC9O14530 226 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 XPO1O14980 1071 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SYF2O95926 243 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SLC12A2P55011 1212 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 IRX1P78414 480 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 BNC1Q01954 994 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TFDP1Q14186 410 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 EPHA10Q5JZY3 1008 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RNF207Q6ZRF8 634 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 GIPC2Q8TF65 315 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 OSCP1Q8WVF1 389 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 FAM89AQ96GI7 184 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 VTI1BQ9UEU0 232 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ANGPTL2Q9UKU9 493 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 KDM6AO15550 1401 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SMCO2A6NFE2 343 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 RASSF9O75901 435 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ABL2P42684 1182 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 GCLCP48506 637 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 UBASH3AP57075 661 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 C4orf22Q6V702 233 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC186Q7Z3E2 898 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CHCHD4Q8N4Q1 142 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ALKBH8Q96BT7 664 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms