RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PPFIBP1Q86W92 1011 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 VPS37DQ86XT2 251 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF526Q8TF50 670 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 FAM136AQ96C01 138 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 PPANQ9NQ55 473 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ANKIB1Q9P2G1 1089 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 SERTAD1Q9UHV2 236 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 JAG2Q9Y219 1238 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF510Q9Y2H8 683 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 TTC26A0AVF1 554 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 HSF2BPO75031 334 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 FMNL1O95466 1100 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 OAS1P00973 400 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 MYBL1P10243 752 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 PI16Q6UXB8 463 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 USP49Q70CQ1 688 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 MAATS1Q7Z4T9 603 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 PRCCQ92733 491 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 SHISA4Q96DD7 197 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 PAIP2Q9BPZ3 127 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 DBNDD2Q9BQY9 259 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 TMX4Q9H1E5 349 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 PICK1Q9NRD5 415 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 RBM12Q9NTZ6 932 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 RNF181Q9P0P0 153 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 BAIAP2L1Q9UHR4 511 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 G3BP2Q9UN86 482 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 USP17L3A6NCW0 530 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 USP17L4A6NCW7 530 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 IL15P40933 162 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 CTDSPL2Q05D32 466 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 SHROOM1Q2M3G4 852 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 MCMDC2Q4G0Z9 681 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 METTL24Q5JXM2 366 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 DDX46Q7L014 1031 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 USP17L1Q7RTZ2 530 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ADAM7Q9H2U9 754 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 PLCB1Q9NQ66 1216 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 NOP53Q9NZM5 478 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ADAM22Q9P0K1 906 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 SALL4Q9UJQ4 1053 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 UBE2Q2LH0YL09 131 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ABLIM1O14639 778 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 YY1P25490 414 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF844Q08AG5 666 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 LBRQ14739 615 aaKnown RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SDCCAG8Q86SQ7 713 aaPredicted RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CCDC170Q8IYT3 715 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SUPT20HQ8NEM7 779 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 GPATCH3Q96I76 525 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 DSCC1Q9BVC3 393 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 NFU1Q9UMS0 254 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 C2CD2Q9Y426 696 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 FNDC1Q4ZHG4 1894 aaPredicted RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 PATJQ8NI35 1801 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 OBSL1O75147 1896 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 FRMPD4Q14CM0 1322 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SYNRGQ9UMZ2 1314 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SIGLEC16A6NMB1 481 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 PTPREP23469 700 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SCNN1BP51168 640 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ALDH5A1P51649 535 aaPredicted RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 NCALDP61601 193 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 NTRK3Q16288 839 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ERMARDQ5T6L9 678 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CDC42EP5Q6NZY7 148 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CASKIN2Q8WXE0 1202 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SLC35B4Q969S0 331 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 C12orf42Q96LP6 360 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 DEFB129Q9H1M3 183 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ATP8A2Q9NTI2 1148 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 PPP1R1BQ9UD71 204 aaPredicted RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ZMYND8Q9ULU4 1186 aaPredicted RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 AFG3L2Q9Y4W6 797 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 COL4A3Q01955 1670 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SLURP2P0DP57 97 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CCND1P24385 295 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 KRT9P35527 623 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 GYG1P46976 350 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 WASHC4Q2M389 1173 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 GNPTABQ3T906 1256 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 TTC39AQ5SRH9 613 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CCDC122Q5T0U0 273 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 MB21D2Q8IYB1 491 aaPredicted RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ANKLE1Q8NAG6 615 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ATXN2LQ8WWM7 1075 aaKnown RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 UTP4Q969X6 686 aaKnown RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 OSBPL1AQ9BXW6 950 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 KATNBL1Q9H079 304 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ARHGEF3Q9NR81 526 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 DNAAF2Q9NVR5 837 aaKnown RBP6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CEP126Q9P2H0 1117 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 CAPN11Q9UMQ6 739 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 SLC45A1Q9Y2W3 748 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 C5orf42Q9H799 3197 aa6.13□□□□□ -1.43
CSDE1-202ENST00000339438 ASTN1O14525 1302 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 BSNQ9UPA5 3926 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 STXBP3O00186 592 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 TRAF5O00463 557 aa6.12□□□□□ -1.43
CSDE1-202ENST00000339438 POLR2DO15514 142 aaKnown RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms