RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SHCBP1Q8NEM2 672 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 P2RX5Q93086 422 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 NACC1Q96RE7 527 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ZIC5Q96T25 663 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 PARK7Q99497 189 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 ZSWIM4Q9H7M6 989 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 JPH1Q9HDC5 661 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 MORF4L1Q9UBU8 362 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 SLC9A2Q9UBY0 812 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ADD3Q9UEY8 706 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 TCEAL9Q9UHQ7 104 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ZNFX1Q9P2E3 1918 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 NFASCO94856 1347 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ARHGEF35A5YM69 484 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 FAM155AB1AL88 458 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 BACH1O14867 736 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 SLC10A3P09131 477 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 CCNE1P24864 410 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 CDC25BP30305 580 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 YWHABP31946 246 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 ICAM3P32942 547 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 COPB2P35606 906 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GCLCP48506 637 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 RARRES1P49788 294 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 NPEPPSP55786 919 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 STIM1Q13586 685 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 LY6KQ17RY6 165 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ZNF746Q6NUN9 644 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 SWSAP1Q6NVH7 229 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 PADI6Q6TGC4 694 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 CCDC186Q7Z3E2 898 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 FILIP1Q7Z7B0 1213 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 CREBRFQ8IUR6 639 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 NELFCDQ8IXH7 590 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 DAW1Q8N136 415 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 NEK9Q8TD19 979 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GTF3C2Q8WUA4 911 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 DHTKD1Q96HY7 919 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 CDHR1Q96JP9 859 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 TRIM47Q96LD4 638 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 SENP7Q9BQF6 1050 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 SRRTQ9BXP5 876 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 IKZF4Q9H2S9 585 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 PDGFCQ9NRA1 345 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 GABBR1Q9UBS5 961 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ABT1Q9ULW3 272 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 PCDHA10Q9Y5I2 948 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.59□□□□□ -1.67
MCF2-201ENST00000338585 PLXNB2O15031 1838 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ADGRA2Q96PE1 1338 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 SYNGAP1Q96PV0 1343 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 TEX33O43247 280 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 USO1O60763 962 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 HIP1RO75146 1068 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 TBCAO75347 108 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 FARP2O94887 1054 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 STBD1O95210 358 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 LYPLA2O95372 231 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GGPS1O95749 300 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 MYBP10242 640 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 MUTP22033 750 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 NMT1P30419 496 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 SFNP31947 248 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 HOXD13P35453 343 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 PSMC5P62195 406 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 CCNA1P78396 465 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 KCNA1Q09470 495 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 MAPK7Q13164 816 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 PSMD2Q13200 908 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 KRT31Q15323 416 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 FAM110CQ1W6H9 321 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ZNF792Q3KQV3 632 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 COBLL1Q53SF7 1204 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GJC2Q5T442 439 aaPredicted RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 CENPPQ6IPU0 288 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ABHD15Q6UXT9 468 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 ANO5Q75V66 913 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 TMC6Q7Z403 805 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GPR142Q7Z601 462 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 C4orf19Q8IY42 314 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GUF1Q8N442 669 aaKnown RBP4.59□□□□□ -1.67
MCF2-201ENST00000338585 CSGALNACT2Q8N6G5 542 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 SCFD1Q8WVM8 642 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 COPS5Q92905 334 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 KCNF1Q9H3M0 494 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 GPRC5CQ9NQ84 441 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 TAB2Q9NYJ8 693 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 TLL2Q9Y6L7 1015 aa4.59□□□□□ -1.67
MCF2-201ENST00000338585 WDR81Q562E7 1941 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 GSTTP1A0A1W2PQM5 241 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 MANSC4A6NHS7 340 aaPredicted RBP4.59□□□□□ -1.68
MCF2-201ENST00000338585 KCNJ18B7U540 433 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 PRPF6O94906 941 aaKnown RBP4.59□□□□□ -1.68
MCF2-201ENST00000338585 FAM13AO94988 1023 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 PSAPP07602 524 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 SUPT20HL2P0C7V6 817 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 ATP4AP20648 1035 aa4.59□□□□□ -1.68
MCF2-201ENST00000338585 SOX10P56693 466 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms