RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 TCERG1LQ5VWI1 586 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 TATDN1Q6P1N9 297 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 MAEAQ7L5Y9 396 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 KSR1Q8IVT5 923 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 TPH2Q8IWU9 490 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 FLAD1Q8NFF5 587 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 CNKSR1Q969H4 720 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 ZIM3Q96PE6 472 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 NUP58Q9BVL2 599 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 NT5C3AQ9H0P0 336 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 BUB1O43683 1085 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 MOCS3O95396 460 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 KCNA1Q09470 495 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 ADAM9Q13443 819 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 DGKZQ13574 1117 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 SCFD1Q8WVM8 642 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 CLIC2O15247 247 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 FKBP3Q00688 224 aaKnown RBP17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 ORC2Q13416 577 aaPredicted RBP17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 PLS1Q14651 629 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 DLGAP5Q15398 846 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 DCAF17Q5H9S7 520 aaPredicted RBP17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 SFR1Q86XK3 245 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 MKL1Q969V6 931 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 ERGIC2Q96RQ1 377 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 LSM14BQ9BX40 385 aaKnown RBP17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 SIK3Q9Y2K2 1263 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 COL4A3BPQ9Y5P4 624 aa17.04■□□□□ 0.32
SHROOM1-201ENST00000319854 EML1O00423 815 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 MSH4O15457 936 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 KIF11P52732 1056 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 MMGT1Q8N4V1 131 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 OGFOD1Q8N543 542 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 SPATA4Q8NEY3 305 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 SH2D3AQ9BRG2 576 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 REEP2Q9BRK0 252 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 KCNMB3Q9NPA1 279 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 DNM3Q9UQ16 869 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 CAPN6Q9Y6Q1 641 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 OPLAHO14841 1288 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 KIAA0754O94854 1291 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 STAT2P52630 851 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 LRRC63Q05C16 580 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 NNTQ13423 1086 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 KCTD19Q17RG1 926 aaPredicted RBP17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 NAA35Q5VZE5 725 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 B4GALNT4Q76KP1 1039 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 HOMER2Q9NSB8 354 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 MYO3BQ8WXR4 1341 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 COL11A2P13942 1736 aaPredicted RBP17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 LTBP1Q14766 1721 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 OPA1O60313 960 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 MYBP10242 640 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 ACTN1P12814 892 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 RASSF7Q02833 373 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 ACTN3Q08043 901 aaPredicted RBP17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 RAPGEF1Q13905 1077 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 MEA1Q16626 185 aa17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 TBC1D10BQ4KMP7 808 aaPredicted RBP17.03■□□□□ 0.32
SHROOM1-201ENST00000319854 NCK2O43639 380 aa17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 FGFR1OPO95684 399 aaKnown RBP17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 EPB41P11171 864 aaKnown RBP17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 NR2F2P24468 414 aa17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 LSP1P33241 339 aa17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 USP11P51784 963 aa17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 SNX12Q9UMY4 172 aa17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 KDM3AQ9Y4C1 1321 aa17.02■□□□□ 0.32
SHROOM1-201ENST00000319854 FAM153BP0C7A2 387 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 POLD1P28340 1107 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 FAM153CQ494X1 144 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 RNF187Q5TA31 235 aaPredicted RBP17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 STYK1Q6J9G0 422 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 NFRKBQ6P4R8 1299 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 CPXCR1Q8N123 301 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 ETNPPLQ8TBG4 499 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 PURBQ96QR8 312 aaKnown RBP17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 LRRC27Q9C0I9 530 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 A1CFQ9NQ94 594 aaKnown RBP17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 FAM153AQ9UHL3 310 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 BCS1LQ9Y276 419 aa17.02■□□□□ 0.31
SHROOM1-201ENST00000319854 CLGNO14967 610 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 RXRBP28702 533 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 PPP1R2P41236 205 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 KCNMA1Q12791 1236 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 HAUS3Q68CZ6 603 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 RUSC1Q9BVN2 902 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 PCDHA13Q9Y5I0 950 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 ZSCAN5CA6NGD5 496 aaPredicted RBP17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 ZNF233A6NK53 670 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 ECM2O94769 699 aaPredicted RBP17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 GCNT3O95395 438 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 SPATA31C1P0DKV0 1188 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 HDLBPQ00341 1268 aaKnown RBP17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 SLFN12Q8IYM2 578 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 RETREG2Q8NC44 543 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 LENG9Q96B70 501 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 KLC4Q9NSK0 619 aa17.01■□□□□ 0.31
SHROOM1-201ENST00000319854 KCNG1Q9UIX4 513 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms