RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 WDR47O94967 919 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 GSNP06396 782 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 OSTNP61366 133 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 HSPH1Q92598 858 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 IFT43Q96FT9 208 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ZNF274Q96GC6 653 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ZMYND12Q9H0C1 365 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 UBE2TQ9NPD8 197 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ARHGAP26Q9UNA1 814 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 TNKSO95271 1327 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 KDM1AO60341 852 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 MYO1DO94832 1006 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 OSBPP22059 807 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 UBXN2AP68543 259 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 PTGDRQ13258 359 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 GCKRQ14397 625 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 CDO1Q16878 200 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 CEP55Q53EZ4 464 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 KIAA1755Q5JYT7 1200 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 FAM180AQ6UWF9 173 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 LARP4BQ92615 738 aaKnown RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 USP28Q96RU2 1077 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 FSD1LQ9BXM9 530 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ZMYM6O95789 1325 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 FANCAO15360 1455 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 COBLO75128 1261 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 DR1Q01658 176 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 C1orf146Q5VVC0 180 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 KIAA0825Q8IV33 1275 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 CEP170P1Q96L14 293 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 CLIC6Q96NY7 704 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 PITPNM3Q9BZ71 974 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 RUBCNLQ9H714 662 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 TMEM206Q9H813 350 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ZWILCHQ9H900 591 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 STMN3Q9NZ72 180 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ATP11BQ9Y2G3 1177 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 CXCR5P32302 372 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 EIF3BP55884 814 aaKnown RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 RBM6P78332 1123 aaKnown RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ABCB5Q2M3G0 1257 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 THOC1Q96FV9 657 aaKnown RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 SUCLG2Q96I99 432 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 EYA1Q99502 592 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 FAM96AQ9H5X1 160 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 SARS2Q9NP81 518 aaKnown RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 LMBRD1Q9NUN5 540 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 DONSONQ9NYP3 566 aa11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ADD3Q9UEY8 706 aaKnown RBP11.13□□□□□ -0.63
CLIP1-201ENST00000302528 ATP8B1O43520 1251 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 DDAH1O94760 285 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 GSPT1P15170 499 aaKnown RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 NR1D1P20393 614 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 SCARA5Q6ZMJ2 495 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 G2E3Q7L622 706 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 FAM133AQ8N9E0 248 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 FMO2Q99518 471 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 AMNQ9BXJ7 453 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 TMEM60Q9H2L4 133 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 DNAJC17Q9NVM6 304 aaKnown RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 TRIM33Q9UPN9 1127 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 MBD5Q9P267 1494 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 TRAPPC8Q9Y2L5 1435 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 CLIC2O15247 247 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 BRD1O95696 1058 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 VCAM1P19320 739 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 EFTUD2Q15029 972 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 IFNL3Q8IZI9 196 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 PPP1R13BQ96KQ4 1090 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ZBED2Q9BTP6 218 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 CAB39Q9Y376 341 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 GCP02774 474 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ABCD1P33897 745 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ADCY2Q08462 1091 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 SPARCL1Q14515 664 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ME3Q16798 604 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ARHGAP27Q6ZUM4 889 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 EGFL8Q99944 293 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ADA2Q9NZK5 511 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 KLHL8Q9P2G9 620 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 E5RI56 91 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 DPYSL4O14531 572 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ACSL3O95573 720 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 COPS2P61201 443 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 RPS8P62241 208 aaKnown RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 GOLGA8DPQ0D2H9 430 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 NBPF20Q3BBV1 942 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 NBPF10Q6P3W6 841 aaKnown RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 ZNF467Q7Z7K2 595 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-201ENST00000302528 OSBPL10Q9BXB5 764 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 CUEDC2Q9H467 287 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 RNF14Q9UBS8 474 aa11.12□□□□□ -0.63
CLIP1-201ENST00000302528 A1BGP04217 495 aa11.11□□□□□ -0.63
CLIP1-201ENST00000302528 HSPA1AP0DMV8 641 aaKnown RBP11.11□□□□□ -0.63
CLIP1-201ENST00000302528 HSPA1BP0DMV9 641 aaKnown RBP11.11□□□□□ -0.63
CLIP1-201ENST00000302528 DEPDC1Q5TB30 811 aa11.11□□□□□ -0.63
CLIP1-201ENST00000302528 TADA2BQ86TJ2 420 aa11.11□□□□□ -0.63
CLIP1-201ENST00000302528 TDRD7Q8NHU6 1098 aaKnown RBP11.11□□□□□ -0.63
CLIP1-201ENST00000302528 GCNT4Q9P109 453 aa11.11□□□□□ -0.63
CLIP1-201ENST00000302528 HPCAL4Q9UM19 191 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms