RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SRGAP2O75044 1071 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 OSBPP22059 807 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 CCNE1P24864 410 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 CALML3P27482 149 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 ATP2B2Q01814 1243 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 TROAPQ12815 778 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 KCNV1Q6PIU1 500 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 TNS4Q8IZW8 715 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 NEDD1Q8NHV4 660 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 SMCR8Q8TEV9 937 aaPredicted RBP11.37□□□□□ -0.59
UPF3B-201ENST00000276201 NUP133Q8WUM0 1156 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 GDF3Q9NR23 364 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 DISC1Q9NRI5 854 aa11.37□□□□□ -0.59
UPF3B-201ENST00000276201 MEFVO15553 781 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 TFAP4Q01664 338 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 SPA17Q15506 151 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 HAUS3Q68CZ6 603 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 IQCKQ8N0W5 287 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 RNF10Q8N5U6 811 aaKnown RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 ENAHQ8N8S7 591 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 CEP95Q96GE4 821 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 ZFP91Q96JP5 570 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 CAPZA3Q96KX2 299 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 DUSP9Q99956 384 aaKnown RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 PLAGL2Q9UPG8 496 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 GDAQ9Y2T3 454 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 TSPY3P0CV98 308 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 TSPY8P0CW00 308 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 PRPHP41219 470 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 STAT6P42226 847 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 LACTBP83111 547 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 C2orf54Q08AI8 447 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 TTMPQ5BVD1 217 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 CABS1Q96KC9 395 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 ALS2CR12Q96Q35 445 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 P2RX7Q99572 595 aaKnown RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 TUBGCP2Q9BSJ2 902 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 ARHGAP39Q9C0H5 1083 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 MCOLN1Q9GZU1 580 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 EPN3Q9H201 632 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 RPAP3Q9H6T3 665 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 VCPKMTQ9H867 229 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 MTMR4Q9NYA4 1195 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 NYAP2Q9P242 653 aa11.36□□□□□ -0.59
UPF3B-201ENST00000276201 V9GY48 417 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-201ENST00000276201 GRID2IPA4D2P6 1211 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L15C9J2P7 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L13C9JLJ4 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L11C9JVI0 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L18D6R9N7 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L22D6RA61 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L17D6RBQ6 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L19D6RCP7 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L20D6RJB6 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 CTGFP29279 349 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 LIG3P49916 1009 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 USP17L24Q0WX57 530 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 PFKFB3Q16875 520 aaPredicted RBP11.35□□□□□ -0.59
UPF3B-201ENST00000276201 NAALADL2Q58DX5 795 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 RRP12Q5JTH9 1297 aaKnown RBP11.35□□□□□ -0.59
UPF3B-201ENST00000276201 POTEEQ6S8J3 1075 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 OTOP1Q7RTM1 612 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 TAX1BP1Q86VP1 789 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 TEX2Q8IWB9 1127 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 SPICE1Q8N0Z3 855 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 DAGLBQ8NCG7 672 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 CCDC47Q96A33 483 aaKnown RBP11.35□□□□□ -0.59
UPF3B-201ENST00000276201 OSBPL9Q96SU4 736 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 ZKSCAN3Q9BRR0 538 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 LRRC1Q9BTT6 524 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 PLEKHA4Q9H4M7 779 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 KIAA0754O94854 1291 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 SCG2P13521 617 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 SETQ01105 290 aaPredicted RBP11.35□□□□□ -0.59
UPF3B-201ENST00000276201 PPP4R3AQ6IN85 833 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 GALNT17Q6IS24 598 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 CATSPERGQ6ZRH7 1159 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 IFT20Q8IY31 132 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 ANKRD13CQ8N6S4 541 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 LPAR1Q92633 364 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 P2RX5Q93086 422 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 TRIM47Q96LD4 638 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 RUFY1Q96T51 708 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 JADE2Q9NQC1 790 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 DMGDHQ9UI17 866 aaKnown RBP11.35□□□□□ -0.59
UPF3B-201ENST00000276201 PCDHA13Q9Y5I0 950 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 MYH4Q9Y623 1939 aa11.35□□□□□ -0.59
UPF3B-201ENST00000276201 TSPY2A6NKD2 308 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 RBAK-RBAKDNI3L0D1 243 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 CES2O00748 559 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 ZNF263O14978 683 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 ZNF185O15231 689 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 KIF1CO43896 1103 aaKnown RBP11.34□□□□□ -0.59
UPF3B-201ENST00000276201 NMT2O60551 498 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 TRIM21P19474 475 aaKnown RBP11.34□□□□□ -0.59
UPF3B-201ENST00000276201 PAFAH1B1P43034 410 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 GCLCP48506 637 aaPredicted RBP11.34□□□□□ -0.59
UPF3B-201ENST00000276201 NAP1L1P55209 391 aaKnown RBP11.34□□□□□ -0.59
UPF3B-201ENST00000276201 TBC1D8BQ0IIM8 1120 aa11.34□□□□□ -0.59
UPF3B-201ENST00000276201 PAK2Q13177 524 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms