RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TTLL6Q8N841 843 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 CDC26Q8NHZ8 85 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 CELF1Q92879 486 aaKnown RBP12.35□□□□□ -0.43
USP53-201ENST00000274030 SDCCAG3Q96C92 435 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 TPX2Q9ULW0 747 aaKnown RBP12.35□□□□□ -0.43
USP53-201ENST00000274030 GCLMP48507 274 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 RWDD4Q6NW29 188 aaKnown RBP12.35□□□□□ -0.43
USP53-201ENST00000274030 DSTYKQ6XUX3 929 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 ERICH1Q86X53 443 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 DGKHQ86XP1 1220 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 EXT2Q93063 718 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 SLC10A4Q96EP9 437 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 MINPP1Q9UNW1 487 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 USP17L10C9JJH3 530 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 RASGRF2O14827 1237 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 GCKP35557 465 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 CLCN6P51797 869 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 GYS2P54840 703 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 TOGARAM2Q6ZUX3 1019 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 TMEM179Q6ZVK1 233 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 FAM160B2Q86V87 743 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 SFR1Q86XK3 245 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 PBKQ96KB5 322 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 RMDN3Q96TC7 470 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 FMO2Q99518 471 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 SPZ1Q9BXG8 430 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 ABCB6Q9NP58 842 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 ABT1Q9ULW3 272 aaKnown RBP12.35□□□□□ -0.43
USP53-201ENST00000274030 SAMD9Q5K651 1589 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 EFCAB6Q5THR3 1501 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 NPHP4O75161 1426 aaPredicted RBP12.35□□□□□ -0.43
USP53-201ENST00000274030 STX1BP61266 288 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 HP1BP3Q5SSJ5 553 aaPredicted RBP12.35□□□□□ -0.43
USP53-201ENST00000274030 RNF139Q8WU17 664 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 FGD4Q96M96 766 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 SLC12A6Q9UHW9 1150 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 DNAJC12Q9UKB3 198 aa12.35□□□□□ -0.43
USP53-201ENST00000274030 ZBED1O96006 694 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 LRRC63Q05C16 580 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 SNCBQ16143 134 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 RASIP1Q5U651 963 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 CATSPER4Q7RTX7 472 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 PDCD7Q8N8D1 485 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 MARCH10Q8NA82 808 aaPredicted RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 INTUQ9ULD6 942 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 ZNF335Q9H4Z2 1342 aaPredicted RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 EIF3CLB5ME19 914 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 CFLARO15519 480 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 MFAP3LO75121 409 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 TTC4O95801 387 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 EPHB1P54762 984 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 MTMR1Q13613 665 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 RESP18Q5W5W9 173 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 ALKBH8Q96BT7 664 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 EIF3CQ99613 913 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 MRPL46Q9H2W6 279 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 ZHX2Q9Y6X8 837 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 GOLGA8CPA6NN73 597 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 NCF2P19878 526 aaPredicted RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 PSMA2P25787 234 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 IREB2P48200 963 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 ARL6IP4Q66PJ3 421 aaKnown RBP12.34□□□□□ -0.43
USP53-201ENST00000274030 RMDN2Q96LZ7 410 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 AXIN2Q9Y2T1 843 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 PP2D1A8MPX8 630 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 ZNF449Q6P9G9 518 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 KLHL29Q96CT2 875 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 ABCB11O95342 1321 aa12.34□□□□□ -0.43
USP53-201ENST00000274030 F5H423 210 aaPredicted RBP12.33□□□□□ -0.43
USP53-201ENST00000274030 PLS3P13797 630 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 CA4P22748 312 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 SLC27A3Q5K4L6 730 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 SPATS2Q86XZ4 545 aaKnown RBP12.33□□□□□ -0.43
USP53-201ENST00000274030 SPDYE1Q8NFV5 336 aaPredicted RBP12.33□□□□□ -0.43
USP53-201ENST00000274030 NEK9Q8TD19 979 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 CEP95Q96GE4 821 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 BRIP1Q9BX63 1249 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 GOLPH3LQ9H4A5 285 aa12.33□□□□□ -0.43
USP53-201ENST00000274030 GNGT2O14610 69 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 PALMO75781 387 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 ASNSP08243 561 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 SLMAPQ14BN4 828 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 ENAHQ8N8S7 591 aaPredicted RBP12.33□□□□□ -0.44
USP53-201ENST00000274030 PYROXD1Q8WU10 500 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 HVCN1Q96D96 273 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 PANX2Q96RD6 677 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 ANAPC7Q9UJX3 599 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 POLIQ9UNA4 740 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 SNX24Q9Y343 169 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 POTEB3A0JP26 581 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 POTECB2RU33 542 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 ZBTB5O15062 677 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 SLC16A4O15374 487 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 NVLO15381 856 aaKnown RBP12.33□□□□□ -0.44
USP53-201ENST00000274030 CASP8Q14790 479 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 POTEBQ6S5H4 581 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 DEPDC1BQ8WUY9 529 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 MASTLQ96GX5 879 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 USH1CQ9Y6N9 552 aa12.33□□□□□ -0.44
USP53-201ENST00000274030 SMAD1Q15797 465 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms