RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 DAPK3O43293 454 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 MDH1P40925 334 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 NT5C2P49902 561 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TOB1P50616 345 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 STRN3Q13033 797 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 SEPT2Q15019 361 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 C12orf60Q5U649 245 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 CCDC89Q8N998 374 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 IL17RAQ96F46 866 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 ZIM3Q96PE6 472 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 MAP3K14Q99558 947 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 RBM12Q9NTZ6 932 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 AMACRQ9UHK6 382 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 CAPN11Q9UMQ6 739 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 MRPL11Q9Y3B7 192 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 MEGF6O75095 1541 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 KDM6AO15550 1401 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PSMC2P35998 433 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 LBHD1Q9BQE6 289 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 ANO3Q9BYT9 981 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 EPN3Q9H201 632 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PPEF1O14829 653 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 ARL1P40616 181 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 EIF3BP55884 814 aaKnown RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 SNAP25P60880 206 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 KCNB1Q14721 858 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 PPP2R5DQ14738 602 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 NBPF9Q3BBW0 867 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 SGO2Q562F6 1265 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 XKR9Q5GH70 373 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 FAM83BQ5T0W9 1011 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 FAM102BQ5T8I3 360 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 CCSER1Q9C0I3 900 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TAF1DQ9H5J8 278 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-201ENST00000267199 COMMD10Q9Y6G5 202 aa12.5□□□□□ -0.41
VPS33A-201ENST00000267199 TESPA1A2RU30 521 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 DLATP10515 647 aaKnown RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 LMNB1P20700 586 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CDC37Q16543 378 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 IWS1Q96ST2 819 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 TSC22D3Q99576 134 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 TEKT3Q9BXF9 490 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 DNAI2Q9GZS0 605 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 AZI2Q9H6S1 392 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 PCDHA6Q9UN73 950 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 PCDHA8Q9Y5H6 950 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 SLIT1O75093 1534 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 SFI1A8K8P3 1242 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CD19P15391 556 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CACNB3P54284 484 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 MYL7Q01449 175 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 TROAPQ12815 778 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 BIRC2Q13490 618 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 NTRK3Q16288 839 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 ARHGEF18Q6ZSZ5 1173 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 DDX23Q9BUQ8 820 aaKnown RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 ENO4A6NNW6 628 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 ECEL1O95672 775 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 HOXA13P31271 388 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 ERVK-24P63145 666 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 COG7P83436 770 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 STK4Q13043 487 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 PACS2Q86VP3 889 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 GUF1Q8N442 669 aaKnown RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 P3H4Q92791 437 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 ANKZF1Q9H8Y5 726 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 DUSP10Q9Y6W6 482 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CCDC188H7C350 402 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 KLK7P49862 253 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 PDE6CP51160 858 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 PDE1CQ14123 709 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-201ENST00000267199 BSPRYQ5W0U4 402 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CASC4Q6P4E1 433 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 NLRX1Q86UT6 975 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 MAIP1Q8WWC4 291 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CHMP6Q96FZ7 201 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 CSRNP1Q96S65 589 aa12.49□□□□□ -0.41
VPS33A-201ENST00000267199 MYO5BQ9ULV0 1848 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 OVOS2A0A0G2JMS6 1433 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 BMP3P12645 472 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 MSH2P43246 934 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 SEPT6Q14141 434 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 RSRC2Q7L4I2 434 aaKnown RBP12.48□□□□□ -0.41
VPS33A-201ENST00000267199 DDX42Q86XP3 938 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS33A-201ENST00000267199 KIRREL3Q8IZU9 778 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 RAD54LQ92698 747 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 ARL8AQ96BM9 186 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 ZNF653Q96CK0 615 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 RNPC3Q96LT9 517 aaKnown RBP12.48□□□□□ -0.41
VPS33A-201ENST00000267199 TMEM60Q9H2L4 133 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 TYW1Q9NV66 732 aaKnown RBP12.48□□□□□ -0.41
VPS33A-201ENST00000267199 ANAPC4Q9UJX5 808 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 CNTNAP5Q8WYK1 1306 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 POTEB3A0JP26 581 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 FAM196BA6NMK8 535 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 POTECB2RU33 542 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 DKC1O60832 514 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS33A-201ENST00000267199 CAMTA2O94983 1202 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 ITIH3Q06033 890 aa12.48□□□□□ -0.41
VPS33A-201ENST00000267199 COASYQ13057 564 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms