RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 BACH1O14867 736 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 CASP14P31944 242 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 PSMD2Q13200 908 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 C2orf69Q8N8R5 385 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 CTAGE1Q96RT6 745 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 THAP9Q9H5L6 903 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 WDR64B1ANS9 1081 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 HIP1RO75146 1068 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 GSDMDP57764 484 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 ERVK-9P63128 1117 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 ERVK-24P63145 666 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 LY6KQ17RY6 165 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 FRMD3A2A2Y4 597 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 ZNF862O60290 1169 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 FXR1P51114 621 aaKnown RBP eCLIP18.25■□□□□ 0.51
USP4-201ENST00000265560 HUNKP57058 714 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 GRM1Q13255 1194 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 XKR9Q5GH70 373 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 ODR4Q5SWX8 454 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 CCDC60Q8IWA6 550 aaPredicted RBP18.25■□□□□ 0.51
USP4-201ENST00000265560 TC2NQ8N9U0 490 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 GPRASP2Q96D09 838 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 PTPN18Q99952 460 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 NOC4LQ9BVI4 516 aaKnown RBP18.25■□□□□ 0.51
USP4-201ENST00000265560 JPH1Q9HDC5 661 aaPredicted RBP18.25■□□□□ 0.51
USP4-201ENST00000265560 ZNFX1Q9P2E3 1918 aaKnown RBP18.25■□□□□ 0.51
USP4-201ENST00000265560 LRRC10BA6NIK2 292 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 RBAK-RBAKDNI3L0D1 243 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 RARRES1P49788 294 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 DAW1Q8N136 415 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 SAMD3Q8N6K7 520 aa18.25■□□□□ 0.51
USP4-201ENST00000265560 C16orf45Q96MC5 204 aaPredicted RBP18.25■□□□□ 0.51
USP4-201ENST00000265560 LOC285556D6RIA3 1793 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 ACTR2P61160 394 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 KCTD2Q14681 263 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 ANO5Q75V66 913 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 SLC9A2Q9UBY0 812 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 PCDHA10Q9Y5I2 948 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 TBX2Q13207 712 aaPredicted RBP18.24■□□□□ 0.51
USP4-201ENST00000265560 GNPTABQ3T906 1256 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 LRRC55Q6ZSA7 311 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 FAM133AQ8N9E0 248 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 PCMTD1Q96MG8 357 aaPredicted RBP18.24■□□□□ 0.51
USP4-201ENST00000265560 MMP19Q99542 508 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 PARVGQ9HBI0 331 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 FBXO40Q9UH90 709 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 COL4A3BPQ9Y5P4 624 aa18.24■□□□□ 0.51
USP4-201ENST00000265560 DOCK3Q8IZD9 2030 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 SPATA31C2B4DYI2 1134 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 GYPCP04921 128 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 PBX1P40424 430 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 SPAG1Q07617 926 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 KCTD10Q9H3F6 313 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 STK24Q9Y6E0 443 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 EIF3JO75822 258 aaKnown RBP18.23■□□□□ 0.51
USP4-201ENST00000265560 KRT76Q01546 638 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 TBC1D8BQ0IIM8 1120 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 FBXO16Q8IX29 292 aaPredicted RBP18.23■□□□□ 0.51
USP4-201ENST00000265560 TSG101Q99816 390 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 KIFC3Q9BVG8 833 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 PFASO15067 1338 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 TISP43B9A030 160 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 ADAM9Q13443 819 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 MTF1Q14872 753 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 MIIPQ5JXC2 388 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 GJC2Q5T442 439 aaPredicted RBP18.23■□□□□ 0.51
USP4-201ENST00000265560 PPFIBP1Q86W92 1011 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 FAM178BQ8IXR5 827 aa18.23■□□□□ 0.51
USP4-201ENST00000265560 MYH9P35579 1960 aaKnown RBP18.22■□□□□ 0.51
USP4-201ENST00000265560 ARIH2O95376 493 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 EEF1GP26641 437 aaKnown RBP18.22■□□□□ 0.51
USP4-201ENST00000265560 PSMC5P62195 406 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 ZCWPW2Q504Y3 356 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 CCDC150Q8NCX0 1101 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 NOC3LQ8WTT2 800 aaKnown RBP18.22■□□□□ 0.51
USP4-201ENST00000265560 COPS5Q92905 334 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 FGD4Q96M96 766 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 PDGFCQ9NRA1 345 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 WDR81Q562E7 1941 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 NR2F2P24468 414 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 SYCP1Q15431 976 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 FAM102BQ5T8I3 360 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 DNERQ8NFT8 737 aa18.22■□□□□ 0.51
USP4-201ENST00000265560 LGALS16A8MUM7 142 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 CETPP11597 493 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 UBA1P22314 1058 aaKnown RBP18.21■□□□□ 0.51
USP4-201ENST00000265560 APBA1Q02410 837 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 MAPK7Q13164 816 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 CCDC40Q4G0X9 1142 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 CRACR2AQ9BSW2 395 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 SLC26A4O43511 780 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 CASP4P49662 377 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 JAK3P52333 1124 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 LRRC63Q05C16 580 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 KNOP1Q1ED39 458 aaKnown RBP18.21■□□□□ 0.51
USP4-201ENST00000265560 SPRYD7Q5W111 196 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 XRRA1Q6P2D8 792 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 IWS1Q96ST2 819 aa18.21■□□□□ 0.51
USP4-201ENST00000265560 SEPT9Q9UHD8 586 aaPredicted RBP18.21■□□□□ 0.51
USP4-201ENST00000265560 ITGBL1O95965 494 aaPredicted RBP18.21■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms