RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 STAG1Q8WVM7 1258 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 GDAQ9Y2T3 454 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 UBE2SQ16763 222 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 MICAL1Q8TDZ2 1067 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 TRIM62Q9BVG3 475 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 C2orf40Q9H1Z8 148 aa20.6■□□□□ 0.89
UPF1-201ENST00000262803 SETSIPP0DME0 302 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 RNF207Q6ZRF8 634 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 TMTC3Q6ZXV5 915 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 DNAAF3Q8N9W5 541 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 CCDC197Q8NCU1 140 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 PARD3BQ8TEW8 1205 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 PCIF1Q9H4Z3 704 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 ATP6V0A4Q9HBG4 840 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 SYNJ2BP-COX16A0A087WUM0 186 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 RFC1P35251 1148 aaPredicted RBP20.59■□□□□ 0.89
UPF1-201ENST00000262803 KCNQ4P56696 695 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 CASP8Q14790 479 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 OR6B2Q6IFH4 312 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 KCTD6Q8NC69 237 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 CCNYQ8ND76 341 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 GOLPH3LQ9H4A5 285 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 COX16Q9P0S2 106 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 PHKA2P46019 1235 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 EIF3BP55884 814 aaKnown RBP20.59■□□□□ 0.89
UPF1-201ENST00000262803 STXBP2Q15833 593 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 MTERF2Q49AM1 385 aa20.59■□□□□ 0.89
UPF1-201ENST00000262803 RRP15Q9Y3B9 282 aaKnown RBP20.59■□□□□ 0.89
UPF1-201ENST00000262803 KRT76Q01546 638 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 DHX9Q08211 1270 aaKnown RBP20.58■□□□□ 0.89
UPF1-201ENST00000262803 DARS2Q6PI48 645 aaKnown RBP20.58■□□□□ 0.89
UPF1-201ENST00000262803 EXOC4Q96A65 974 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 FAM96AQ9H5X1 160 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 CYP27B1O15528 508 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 SFNP31947 248 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 EPHB1P54762 984 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 PODNQ7Z5L7 613 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 FMR1NBQ8N0W7 255 aaPredicted RBP20.58■□□□□ 0.89
UPF1-201ENST00000262803 MSTO1Q9BUK6 570 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 ABCB6Q9NP58 842 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 ZDHHC9Q9Y397 364 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 STK36Q9NRP7 1315 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 CDK8P49336 464 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 CFAP61Q8NHU2 1237 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 UBN1Q9NPG3 1134 aa20.58■□□□□ 0.89
UPF1-201ENST00000262803 CYP2E1P05181 493 aaPredicted RBP20.58■□□□□ 0.88
UPF1-201ENST00000262803 TTC13Q8NBP0 860 aa20.58■□□□□ 0.88
UPF1-201ENST00000262803 VPS39Q96JC1 886 aa20.58■□□□□ 0.88
UPF1-201ENST00000262803 OVOS2A0A0G2JMS6 1433 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 OVOS2A0A0J9YW53 1432 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 OVOS2Q6IE36 1432 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 K7ERI5 159 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 SLC27A3Q5K4L6 730 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 ABT1Q9ULW3 272 aaKnown RBP20.57■□□□□ 0.88
UPF1-201ENST00000262803 LLGL1Q15334 1064 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 PNMA6AP0CW24 399 aaPredicted RBP20.57■□□□□ 0.88
UPF1-201ENST00000262803 HLFQ16534 295 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 ZNF579Q8NAF0 562 aaKnown RBP20.57■□□□□ 0.88
UPF1-201ENST00000262803 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.57■□□□□ 0.88
UPF1-201ENST00000262803 NEDD4P46934 1319 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 PROM2Q8N271 834 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 CDHR2Q9BYE9 1310 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 SNX1Q13596 522 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 CYB5R4Q7L1T6 521 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 STRIP2Q9ULQ0 834 aa20.57■□□□□ 0.88
UPF1-201ENST00000262803 ZNF667Q5HYK9 610 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 URGCPQ8TCY9 931 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 ADAMTS1Q9UHI8 967 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 IFNA8P32881 189 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 NNTQ13423 1086 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 UBE2TQ9NPD8 197 aaPredicted RBP20.56■□□□□ 0.88
UPF1-201ENST00000262803 CA4P22748 312 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 PAPOLAP51003 745 aaKnown RBP20.56■□□□□ 0.88
UPF1-201ENST00000262803 C1orf228Q6PIY5 440 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 VGLL3A8MV65 326 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 TAC1P20366 129 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 SPDYE1Q8NFV5 336 aaPredicted RBP20.56■□□□□ 0.88
UPF1-201ENST00000262803 FAM20AQ96MK3 541 aa20.56■□□□□ 0.88
UPF1-201ENST00000262803 IQANK1A0A1B0GTG1 560 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 CASP1P29466 404 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 WHAMMQ8TF30 809 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 ZNF212Q9UDV6 495 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 SAT1P21673 171 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 SLC7A5Q01650 507 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 TRIM68Q6AZZ1 485 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 CYP4F22Q6NT55 531 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 CLEC17AQ6ZS10 378 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 TOGARAM2Q6ZUX3 1019 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 CATSPER4Q7RTX7 472 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 SEPT12Q8IYM1 358 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 CTNND1O60716 968 aaKnown RBP20.55■□□□□ 0.88
UPF1-201ENST00000262803 AP3M2P53677 418 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 TFDP2Q14188 446 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 MB21D2Q8IYB1 491 aaPredicted RBP20.55■□□□□ 0.88
UPF1-201ENST00000262803 RBM41Q96IZ5 413 aaKnown RBP20.55■□□□□ 0.88
UPF1-201ENST00000262803 HEXIM2Q96MH2 286 aaKnown RBP20.55■□□□□ 0.88
UPF1-201ENST00000262803 TRIM15Q9C019 465 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 MT-ND3P03897 115 aa20.55■□□□□ 0.88
UPF1-201ENST00000262803 RECQLP46063 649 aaPredicted RBP20.55■□□□□ 0.88
UPF1-201ENST00000262803 TSPY1Q01534 308 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms