RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Kbtbd13Q8C828 458 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gpsm2Q8VDU0 679 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Trub2Q91WG3 331 aaKnown RBP16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Zfyve19Q9DAZ9 389 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Akr1b1P45376 316 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Atp11aP98197 1187 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ppp2r5aQ6PD03 486 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Prkag3Q8BGM7 489 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Med1Q925J9 1575 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gm1661E9Q963 441 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Psmc4P54775 418 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rfc4Q99J62 364 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Git2Q9JLQ2 708 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gm3415J3QMS8 315 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Lrig2Q52KR2 1054 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Dcaf15Q6PFH3 600 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rint1Q8BZ36 792 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Bcl2l12Q9D3J3 255 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gm3404Q9D506 307 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 1700016D06RikQ9DAA5 166 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Bcl9Q9D219 1425 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Prl2c3P04768 224 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Adcy8P97490 1249 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 MlxipQ2VPU4 917 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Birc2Q62210 612 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Hdac10Q6P3E7 666 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Dhx58Q99J87 678 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 HgsQ99LI8 775 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Meis3P97368 378 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Trim43aQ3TL54 445 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Prr7Q3V0I2 269 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Mapk4Q6P5G0 583 aa16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Zcchc8Q9CYA6 709 aaKnown RBP16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Hyou1Q9JKR6 999 aaKnown RBP16.79■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gm10488Q4KL05 212 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rpap2Q8VC34 614 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Abhd2Q9QXM0 425 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Aco1P28271 889 aaKnown RBP16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gjb6P70689 261 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 YarsQ91WQ3 528 aaKnown RBP16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tom1l1Q923U0 474 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rsph3bQ9DA80 389 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sema6bO54951 886 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Peg10Q7TN75 958 aaKnown RBP16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Dnph1Q80VJ3 173 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Epha10Q8BYG9 1007 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Arhgap6O54834 987 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Lonp1Q8CGK3 949 aaKnown RBP16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Trim68Q8K243 485 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Smc6Q924W5 1097 aa16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 CactinQ9CS00 772 aaKnown RBP16.78■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ubn1Q4G0F8 1135 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Slc26a6Q8CIW6 758 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rhobtb3Q9CTN4 611 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Kdm8Q9CXT6 414 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Stk32bQ9JJX8 414 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Psmd10Q9Z2X2 231 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Krt90E9Q1Z0 538 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Serpinb6eI7HJI3 429 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sema4dO09126 861 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gdf10P97737 476 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 GrapQ9CX99 217 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Arl2bpQ9D385 163 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tbx18Q9EPZ6 613 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Pcdh11xF6ZNL5 1338 aa16.77■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rtel1Q0VGM9 1203 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Q6PD19 689 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Tmc4Q7TQ65 694 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Tmem192Q9CXT7 266 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Sucla2Q9Z2I9 463 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Cfap70D3YVL2 1141 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Exoc4O35382 975 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Akap4Q60662 849 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Elf1Q60775 612 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Grm4Q68EF4 912 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 AdalQ80SY6 360 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Llgl1Q80Y17 1036 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Actn2Q9JI91 894 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Slc12a7Q9WVL3 1083 aa16.77■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gm45261A0A1B0GSP6 197 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ppp4cP97470 307 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gcnt1Q09324 428 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Lmntd2Q0VET5 664 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Asap3Q5U464 904 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gm2163Q6PCY5 473 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Lman1lQ8VCD3 505 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Sirt2Q8VDQ8 389 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 MlphQ91V27 590 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ccdc124Q9D8X2 217 aaKnown RBP16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Pik3c2aQ61194 1686 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Zscan2Q07230 614 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Zbtb17Q60821 794 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Krt31Q61765 416 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Lsm14bQ8CGC4 385 aaKnown RBP16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Taf6lQ8R2K4 616 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ift172Q6VH22 1749 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gm36210A0A1B0GS00 229 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Kcnk16G5E845 292 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 PrphP15331 475 aa16.76■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ctnnd1P30999 938 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 22,080 RNA–protein pairs in 29 ms