RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF839A8K0R7 811 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 ARNTLO00327 626 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 KCNAB3O43448 404 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 MYO1BO43795 1136 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 B3GALT2O43825 422 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 PPFIA4O75335 1185 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 DGKIO75912 1065 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 ZFPL1O95159 310 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 BRD1O95696 1058 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 EPHX1P07099 455 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 FAHP16930 419 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 GLRBP48167 497 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 SCNN1GP51170 649 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 PFKPQ01813 784 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 XPCQ01831 940 aaPredicted RBP1.23□□□□□ -2.21
VPS35-212ENST00000640313 CYP4F3Q08477 520 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 FOXF2Q12947 444 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 CRHR2Q13324 411 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 LSAMPQ13449 338 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 PTPAQ15257 358 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 TBR1Q16650 682 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 GNPTABQ3T906 1256 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 PRR16Q569H4 304 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 LY6G5CQ5SRR4 150 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 HECTD2Q5U5R9 776 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 FBXO42Q6P3S6 717 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 DPP8Q6V1X1 898 aaPredicted RBP1.23□□□□□ -2.21
VPS35-212ENST00000640313 USP30Q70CQ3 517 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 C1QL2Q7Z5L3 287 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 ZNF366Q8N895 744 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 SLC25A43Q8WUT9 341 aaPredicted RBP1.23□□□□□ -2.21
VPS35-212ENST00000640313 CLEC4DQ8WXI8 215 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 SMG7Q92540 1137 aaKnown RBP1.23□□□□□ -2.21
VPS35-212ENST00000640313 NELL1Q92832 810 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 FGD4Q96M96 766 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 ZDHHC5Q9C0B5 715 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 R3HDMLQ9H3Y0 253 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 EPB41L1Q9H4G0 881 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 PRDM13Q9H4Q3 707 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 TIMELESSQ9UNS1 1208 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 FZD1Q9UP38 647 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 FRMD4BQ9Y2L6 1034 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 EMC9Q9Y3B6 208 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 HS3ST4Q9Y661 456 aa1.23□□□□□ -2.21
VPS35-212ENST00000640313 ESYT3A0FGR9 886 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 KRIT1O00522 736 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 ZNF185O15231 689 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 SORBS3O60504 671 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 ITGB1P05556 798 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 PDE6AP16499 860 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 MAN2A2P49641 1150 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 SLC7A5Q01650 507 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 HGFACQ04756 655 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 KCNAB2Q13303 367 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 CNGB1Q14028 1251 aaPredicted RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 PAN2Q504Q3 1202 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 CD276Q5ZPR3 534 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 TRIM68Q6AZZ1 485 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 POMZP3Q6PJE2 187 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 CRELD2Q6UXH1 353 aaPredicted RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 CXXC5Q7LFL8 322 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 CCDC103Q8IW40 242 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 ZC3H7AQ8IWR0 971 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 SRRM1Q8IYB3 904 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 SYNE4Q8N205 404 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 CRACR2BQ8N4Y2 399 aaPredicted RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 ZNF276Q8N554 614 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 FAM98AQ8NCA5 519 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 RCBTB1Q8NDN9 531 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 DIO2Q92813 273 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 MIEF2Q96C03 454 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 TACO1Q9BSH4 297 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 MLST8Q9BVC4 326 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 C1QTNF7Q9BXJ2 289 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 NKX2-4Q9H2Z4 354 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 CDIP1Q9H305 208 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 C1orf115Q9H7X2 142 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 PHAXQ9H814 394 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 AGO3Q9H9G7 860 aaKnown RBP1.22□□□□□ -2.21
VPS35-212ENST00000640313 SLC6A20Q9NP91 592 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 TRPS1Q9UHF7 1281 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 FBXL7Q9UJT9 491 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 AKT3Q9Y243 479 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 SH3BP1Q9Y3L3 701 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 SLC12A7Q9Y666 1083 aa1.22□□□□□ -2.21
VPS35-212ENST00000640313 POLR2AP24928 1970 aaKnown RBP1.21□□□□□ -2.22
VPS35-212ENST00000640313 SPATA31A6Q5VVP1 1343 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 ANKRD34BA5PLL1 514 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 MYADML2A6NDP7 307 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 SLC26A4O43511 780 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 KCNH1O95259 989 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 ABHD16AO95870 558 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 SCG5P05408 212 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 NR4A1P22736 598 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 ITGAEP38570 1179 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 RRADP55042 308 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 ELLP55199 621 aaPredicted RBP1.21□□□□□ -2.22
VPS35-212ENST00000640313 NHLH1Q02575 133 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 GRIN1Q05586 938 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 EIF4HQ15056 248 aaKnown RBP1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms