RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	PDGFC	Q9NRA1	345 aa		11.66	□□□□□ -0.54
NECAP1-223	ENST00000640091	PANK4	Q9NVE7	773 aa		11.66	□□□□□ -0.54
NECAP1-223	ENST00000640091	FANCL	Q9NW38	375 aa		11.66	□□□□□ -0.54
NECAP1-223	ENST00000640091	TBC1D7	Q9P0N9	293 aa		11.66	□□□□□ -0.54
NECAP1-223	ENST00000640091	DACH1	Q9UI36	760 aa		11.66	□□□□□ -0.54
NECAP1-223	ENST00000640091	PCDHA10	Q9Y5I2	948 aa		11.66	□□□□□ -0.54
NECAP1-223	ENST00000640091	PVALEF	A0A1B0GWK0	134 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	SFI1	A8K8P3	1242 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	SMTNL1	A8MU46	457 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	AOC2	O75106	756 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	ARIH2	O95376	493 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	UBA1	P22314	1058 aa	Known RBP	11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	PTGS1	P23219	599 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	YY1	P25490	414 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	MAPK4	P31152	587 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	SFN	P31947	248 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	JAK3	P52333	1124 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	ACTR2	P61160	394 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	MYL5	Q02045	173 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	SREBF2	Q12772	1141 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	GIT2	Q14161	759 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	UTP14C	Q5TAP6	766 aa	Known RBP	11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	ZNF746	Q6NUN9	644 aa	Predicted RBP	11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	RINT1	Q6NUQ1	792 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	C17orf99	Q6UX52	265 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	ARMCX2	Q7L311	632 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	PIAS4	Q8N2W9	510 aa	Predicted RBP	11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	GLIS3	Q8NEA6	775 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	MPHOSPH6	Q99547	160 aa	Known RBP	11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	GABBR1	Q9UBS5	961 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	NFASC	O94856	1347 aa		11.65	□□□□□ -0.54
NECAP1-223	ENST00000640091	IKBKB	O14920	756 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	ATP1A3	P13637	1013 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	TM4SF4	P48230	202 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	LRRC41	Q15345	812 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	ABRA	Q8N0Z2	381 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	KIAA0895	Q8NCT3	520 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	CCDC47	Q96A33	483 aa	Known RBP	11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	SENP7	Q9BQF6	1050 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	REEP2	Q9BRK0	252 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	ZFYVE28	Q9HCC9	887 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	CTNND2	Q9UQB3	1225 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	NFE2L3	Q9Y4A8	694 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	ADGRA2	Q96PE1	1338 aa		11.65	□□□□□ -0.55
NECAP1-223	ENST00000640091	ASB14	A6NK59	587 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	RSPH10B2	B2RC85	870 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	RSPH10B	P0C881	870 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	ERCC5	P28715	1186 aa	Predicted RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	YWHAB	P31946	246 aa	Known RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	PSMC5	P62195	406 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	GRB14	Q14449	540 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	DEFB115	Q30KQ5	88 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	CNNM4	Q6P4Q7	775 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	ABHD15	Q6UXT9	468 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	MAEA	Q7L5Y9	396 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	ADSSL1	Q8N142	457 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	ENOX1	Q8TC92	643 aa	Known RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	NEK9	Q8TD19	979 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	COPS5	Q92905	334 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	HHIPL1	Q96JK4	782 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	TRIM5	Q9C035	493 aa		11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	ZCCHC17	Q9NP64	241 aa	Known RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	SAMSN1	Q9NSI8	373 aa	Known RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	DDX41	Q9UJV9	622 aa	Known RBP	11.64	□□□□□ -0.55
NECAP1-223	ENST00000640091	TRIM49B	A6NDI0	452 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	BACH1	O14867	736 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	FARP2	O94887	1054 aa	Predicted RBP	11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	GGPS1	O95749	300 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	TGFB3	P10600	412 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	MUT	P22033	750 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	PMS1	P54277	932 aa	Known RBP	11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	COASY	Q13057	564 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	C1orf186	Q6ZWK4	172 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	CCDC60	Q8IWA6	550 aa	Predicted RBP	11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	NPLOC4	Q8TAT6	608 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	MORC4	Q8TE76	937 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	NELFB	Q8WX92	580 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	FGFBP2	Q9BYJ0	223 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	MLXIP	Q9HAP2	919 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	KIAA1217	Q5T5P2	1943 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	ZNF862	O60290	1169 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	PSAP	P07602	524 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	TXN	P10599	105 aa	Known RBP	11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	NPEPPS	P55786	919 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	EHHADH	Q08426	723 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	PAK1	Q13153	545 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	NEDD9	Q14511	834 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	PLA2G4F	Q68DD2	849 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	CCDC65	Q8IXS2	484 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	C4orf19	Q8IY42	314 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	KCTD17	Q8N5Z5	321 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	EEF2KMT	Q96G04	330 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	MAML3	Q96JK9	1138 aa		11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.63	□□□□□ -0.55
NECAP1-223	ENST00000640091	SYNGAP1	Q96PV0	1343 aa		11.62	□□□□□ -0.55
NECAP1-223	ENST00000640091	ARHGEF35	A5YM69	484 aa		11.62	□□□□□ -0.55
NECAP1-223	ENST00000640091	SNAI1	O95863	264 aa	Predicted RBP	11.62	□□□□□ -0.55
NECAP1-223	ENST00000640091	RARRES1	P49788	294 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms