RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 STXBP3O00186 592 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 RASGRF2O14827 1237 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ASMTLO95671 621 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ADCY1Q08828 1119 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ZSCAN23Q3MJ62 389 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TMCO4Q5TGY1 634 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TOGARAM2Q6ZUX3 1019 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ZFP42Q96MM3 310 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 PARVGQ9HBI0 331 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 HOMER3Q9NSC5 361 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 RNF40O75150 1001 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 PCK1P35558 622 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF75DP51815 510 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 YWHAGP61981 247 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 MTMR1Q13613 665 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 EXOC3L4Q17RC7 722 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 SNRNP48Q6IEG0 339 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 TYW1BQ6NUM6 668 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 SPATA2LQ8IUW3 424 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 INTS4Q96HW7 963 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 PRIMPOLQ96LW4 560 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 DBNDD2Q9BQY9 259 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 SPZ1Q9BXG8 430 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 FAM129AQ9BZQ8 928 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 PALLDQ8WX93 1383 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 ERVV-1B6SEH8 477 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 RGS16O15492 202 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 UPP2O95045 317 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 STX2P32856 288 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 LONP1P36776 959 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 GRIN1Q05586 938 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 TMED8Q6PL24 325 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 DEPDC1BQ8WUY9 529 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 SLC25A13Q9UJS0 675 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 CLDN3O15551 220 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 CELF2O95319 508 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 MAGEA1P43355 309 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 ALDH7A1P49419 539 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 PTPAQ15257 358 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 SYTL3Q4VX76 610 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 PDXDC1Q6P996 788 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 RMDN3Q96TC7 470 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 TSEN34Q9BSV6 310 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 EFHD1Q9BUP0 239 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 GDAQ9Y2T3 454 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 ZMYM6O95789 1325 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 TBC1D12O60347 775 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 MAPK4P31152 587 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 TRIM67Q6ZTA4 783 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 FAM186BQ8IYM0 893 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 MCPH1Q8NEM0 835 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 YME1L1Q96TA2 773 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 KIAA1586Q9HCI6 787 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF202O95125 648 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 RNF10Q8N5U6 811 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 NSUN6Q8TEA1 469 aaKnown RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.59□□□□□ -1.353e-7■■■□□ 19
SCN1A-217ENST00000637988 ZNF197O14709 1029 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 NSUN2Q08J23 767 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 CDC37Q16543 378 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-217ENST00000637988 MFN1Q8IWA4 741 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF302Q9NR11 478 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 MSRAQ9UJ68 235 aa6.59□□□□□ -1.35
SCN1A-217ENST00000637988 KRIT1O00522 736 aa6.59□□□□□ -1.36
SCN1A-217ENST00000637988 MYL1P05976 194 aa6.59□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF568Q3ZCX4 644 aa6.59□□□□□ -1.36
SCN1A-217ENST00000637988 TRIM58Q8NG06 486 aa6.59□□□□□ -1.36
SCN1A-217ENST00000637988 MTBPQ96DY7 904 aa6.59□□□□□ -1.36
SCN1A-217ENST00000637988 FAM207AQ9NSI2 230 aaPredicted RBP6.59□□□□□ -1.36
SCN1A-217ENST00000637988 SCHIP1Q9P0W5 487 aaPredicted RBP6.59□□□□□ -1.36
SCN1A-217ENST00000637988 RSPH14Q9UHP6 348 aa6.59□□□□□ -1.36
SCN1A-217ENST00000637988 MECOMQ03112 1051 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 R3HDM1Q15032 1099 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ANKRD20A4Q4UJ75 823 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ANKRD20A8PQ5CZ79 823 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ANKRD20A2Q5SQ80 823 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ANKRD20A1Q5TYW2 823 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ANKS6Q68DC2 871 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CERKQ8TCT0 537 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ULK4Q96C45 1275 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 TBC1D2Q9BYX2 928 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CAPN2P17655 700 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 VCLP18206 1134 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 VCPP55072 806 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CYP27A1Q02318 531 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGEF7Q14155 803 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 SEPT2Q15019 361 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF667Q5HYK9 610 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CLEC4GQ6UXB4 293 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 MMS22LQ6ZRQ5 1243 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF438Q7Z4V0 828 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 TMCO5AQ8N6Q1 288 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF496Q96IT1 587 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 NUDT12Q9BQG2 462 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 KAT6AQ92794 2004 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L15C9J2P7 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L13C9JLJ4 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L11C9JVI0 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L18D6R9N7 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L22D6RA61 530 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms