RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ATP1A1P05023 1023 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC172P0C7W6 258 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FOSL2P15408 326 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GCFC2P16383 781 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GTF2A2P52657 109 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 KIF11P52732 1056 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 MTMR3Q13615 1198 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 TYW1BQ6NUM6 668 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 TTI2Q6NXR4 508 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 PPP1R18Q6NYC8 613 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 CCNI2Q6ZMN8 369 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 FBXO33Q7Z6M2 555 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 MYOCDQ8IZQ8 938 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 OTUD6BQ8N6M0 293 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 AGBL3Q8NEM8 1001 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 WHAMMQ8TF30 809 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 GPKOWQ92917 476 aaPredicted RBP eCLIP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 NSUN4Q96CB9 384 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 NDST4Q9H3R1 872 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 STIM2Q9P246 746 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ANKIB1Q9P2G1 1089 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 LEMD3Q9Y2U8 911 aa4.38□□□□□ -1.71
SCN1A-214ENST00000637038 BZW2Q9Y6E2 419 aaKnown RBP4.38□□□□□ -1.71
SCN1A-214ENST00000637038 ESYT2A0FGR8 921 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 KLRF2D3W0D1 207 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 ENC1O14682 589 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 NKRFO15226 690 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 ANXA13P27216 316 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 RDXP35241 583 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 MRPL12P52815 198 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 ASIC2Q16515 512 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 PPP2R5EQ16537 467 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 POTEHQ6S545 545 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 RRAGAQ7L523 313 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 C4orf32Q8N8J7 132 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 NOA1Q8NC60 698 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 LARP4BQ92615 738 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SYN2Q92777 582 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CEP63Q96MT8 703 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CHP1Q99653 195 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 TRIM9Q9C026 710 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SLC5A4Q9NY91 659 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 MSRAQ9UJ68 235 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 PCDHA6Q9UN73 950 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 PCDHA8Q9Y5H6 950 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CYP2D7A0A087X1C5 515 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 TRIM49BA6NDI0 452 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 HAX1O00165 279 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 POLRMTO00411 1230 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SERPING1P05155 500 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SSBP05455 408 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CDC25AP30304 524 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 GTF2A1P52655 376 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 ASPRV1Q53RT3 343 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 RUFY4Q6ZNE9 571 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 RINLQ6ZS11 566 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CROCCP2Q86T23 111 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 EXOC8Q8IYI6 725 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 RNF217Q8TC41 542 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF507Q8TCN5 953 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SNX29Q8TEQ0 813 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SPOCK2Q92563 424 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 FAM84BQ96KN1 310 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 DRC1Q96MC2 740 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 MMS19Q96T76 1030 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 PLIN2Q99541 437 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SH2D4AQ9H788 454 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CEP72Q9P209 647 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 MINPP1Q9UNW1 487 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SMCHD1A6NHR9 2005 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SIP14410 1827 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 ARID2Q68CP9 1835 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 DOCK5Q9H7D0 1870 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 NDUFAB1O14561 156 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CETN3O15182 167 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 TNFRSF8P28908 595 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 TM4SF1P30408 202 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 INPP5BP32019 993 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 EIF4A3P38919 411 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 MATR3P43243 847 aaKnown RBP eCLIP4.37□□□□□ -1.711e-10■■■■■ 37.8
SCN1A-214ENST00000637038 HERVK_113P62684 666 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 GNGT1P63211 74 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 FKBP3Q00688 224 aaKnown RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 TRAF1Q13077 416 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 C12orf60Q5U649 245 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 DCAF15Q66K64 600 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 STXBP4Q6ZWJ1 553 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 SYCE1Q8N0S2 351 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 TBC1D22AQ8WUA7 517 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 COA7Q96BR5 231 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 COL25A1Q9BXS0 654 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 FAM207AQ9NSI2 230 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 PNMA3Q9UL41 463 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCN1A-214ENST00000637038 CSADQ9Y600 493 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 PDE4DIPQ5VU43 2346 aa4.37□□□□□ -1.71
SCN1A-214ENST00000637038 UTRNP46939 3433 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 GOLGA6L10A0A0M3HER8 536 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 TRAF5O00463 557 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms