RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 BCAS3Q9H6U6 928 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 ZSWIM4Q9H7M6 989 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 EFCC1Q9HA90 598 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 TCEAL9Q9UHQ7 104 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 NRBP1Q9UHY1 535 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 LRRC37A2A6NM11 1700 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 NFASCO94856 1347 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 DNAJC25-GNG10A0A024R161 153 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 GOLGA6L6A8MZA4 724 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 CBFA2T2O43439 604 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 ICAM3P32942 547 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 ZNF746Q6NUN9 644 aaPredicted RBP18.75■□□□□ 0.59
CLN3-252ENST00000636907 TTI2Q6NXR4 508 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 ANKRD13CQ8N6S4 541 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 P2RX5Q93086 422 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 SENP7Q9BQF6 1050 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 PCDHA2Q9Y5H9 948 aa18.75■□□□□ 0.59
CLN3-252ENST00000636907 QARSP47897 775 aaKnown RBP18.74■□□□□ 0.59
CLN3-252ENST00000636907 GCLCP48506 637 aaPredicted RBP18.74■□□□□ 0.59
CLN3-252ENST00000636907 SP2Q02086 613 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 LRRC41Q15345 812 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 UGCGQ16739 394 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 CCDC144BQ3MJ40 725 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 HERC4Q5GLZ8 1057 aaPredicted RBP18.74■□□□□ 0.59
CLN3-252ENST00000636907 SEPT14Q6ZU15 432 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 C1orf186Q6ZWK4 172 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 RASAL3Q86YV0 1011 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 GUF1Q8N442 669 aaKnown RBP18.74■□□□□ 0.59
CLN3-252ENST00000636907 RDM1Q8NG50 284 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 FGFBP2Q9BYJ0 223 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 TBC1D7Q9P0N9 293 aa18.74■□□□□ 0.59
CLN3-252ENST00000636907 LYPLA2O95372 231 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 CCNA1P78396 465 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 APTXQ7Z2E3 356 aaKnown RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 CCDC186Q7Z3E2 898 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 TRIM47Q96LD4 638 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 DUSP9Q99956 384 aaKnown RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 SEMA6BQ9H3T3 888 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 ZHX3Q9H4I2 956 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 JPH1Q9HDC5 661 aaPredicted RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 INTS13Q9NVM9 706 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 MORF4L1Q9UBU8 362 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 DOCK5Q9H7D0 1870 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 BICDL2A1A5D9 508 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 RSPH10B2B2RC85 870 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 RSPH10BP0C881 870 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 ZNF157P51786 506 aaPredicted RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 ANKRD40Q6AI12 368 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 CENPPQ6IPU0 288 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 SMAP1Q8IYB5 467 aaPredicted RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 ZNF830Q96NB3 372 aaPredicted RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 PARK7Q99497 189 aaKnown RBP18.73■□□□□ 0.59
CLN3-252ENST00000636907 SLC9A2Q9UBY0 812 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 TELO2Q9Y4R8 837 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 PCDHA10Q9Y5I2 948 aa18.73■□□□□ 0.59
CLN3-252ENST00000636907 LOXHD1Q8IVV2 1947 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 ARHGEF35A5YM69 484 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 SORBS3O60504 671 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 PTGS1P23219 599 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 PSMC5P62195 406 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 SFR1Q86XK3 245 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 C4orf19Q8IY42 314 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 MYOCDQ8IZQ8 938 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 POLD4Q9HCU8 107 aa18.72■□□□□ 0.59
CLN3-252ENST00000636907 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.72■□□□□ 0.59
CLN3-252ENST00000636907 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.72■□□□□ 0.59
CLN3-252ENST00000636907 PASKQ96RG2 1323 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 A0A1B0GTH6 734 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 B4DLN1 442 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 TBCAO75347 108 aaKnown RBP18.71■□□□□ 0.59
CLN3-252ENST00000636907 TMC6Q7Z403 805 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 SAPCD2Q86UD0 394 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 IRF2BP1Q8IU81 584 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 MPHOSPH6Q99547 160 aaKnown RBP18.71■□□□□ 0.59
CLN3-252ENST00000636907 SRRTQ9BXP5 876 aaKnown RBP18.71■□□□□ 0.59
CLN3-252ENST00000636907 THAP9Q9H5L6 903 aa18.71■□□□□ 0.59
CLN3-252ENST00000636907 DBR1Q9UK59 544 aaKnown RBP18.71■□□□□ 0.59
CLN3-252ENST00000636907 TPM3P06753 285 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 YWHABP31946 246 aaKnown RBP18.7■□□□□ 0.58
CLN3-252ENST00000636907 ACTR2P61160 394 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 SP4Q02446 784 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 TCP11X2Q5H9J9 407 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 CYFIP1Q7L576 1253 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 FILIP1Q7Z7B0 1213 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 ZSCAN30Q86W11 494 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 CSGALNACT2Q8N6G5 542 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 NOC3LQ8WTT2 800 aaKnown RBP18.7■□□□□ 0.58
CLN3-252ENST00000636907 KCND2Q9NZV8 630 aa18.7■□□□□ 0.58
CLN3-252ENST00000636907 LIMA1Q9UHB6 759 aaKnown RBP18.7■□□□□ 0.58
CLN3-252ENST00000636907 ZNFX1Q9P2E3 1918 aaKnown RBP18.7■□□□□ 0.58
CLN3-252ENST00000636907 SFI1A8K8P3 1242 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 ESPNB1AK53 854 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 KCNJ18B7U540 433 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 FAM13AO94988 1023 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 PSAPP07602 524 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 UBA1P22314 1058 aaKnown RBP18.69■□□□□ 0.58
CLN3-252ENST00000636907 RARRES1P49788 294 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 SPAG1Q07617 926 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 KCNJ12Q14500 433 aa18.69■□□□□ 0.58
CLN3-252ENST00000636907 NR1I3Q14994 352 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms