RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 VAT1LQ9HCJ6 419 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 NR2E1Q9Y466 385 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 C2CD4DB7Z1M9 353 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 ASGR2P07307 311 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 CD52P31358 61 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 CLCN5P51795 746 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 KCNC3Q14003 757 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 LLGL2Q6P1M3 1020 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 TMEM184AQ6ZMB5 413 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 TSHZ1Q6ZSZ6 1077 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 KIAA2013Q8IYS2 634 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 GPR20Q99678 358 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 CDY2AQ9Y6F7 541 aa16.92■□□□□ 0.3
CLN3-249ENST00000636685 DHX16O60231 1041 aaKnown RBP16.91■□□□□ 0.3
CLN3-249ENST00000636685 IBSPP21815 317 aaPredicted RBP16.91■□□□□ 0.3
CLN3-249ENST00000636685 HOXA13P31271 388 aaPredicted RBP16.91■□□□□ 0.3
CLN3-249ENST00000636685 UBE3AQ05086 875 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 CWF19L1Q69YN2 538 aaKnown RBP16.91■□□□□ 0.3
CLN3-249ENST00000636685 STOX1Q6ZVD7 989 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 CYFIP1Q7L576 1253 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 FLCNQ8NFG4 579 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 KCNG4Q8TDN1 519 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 ZKSCAN3Q9BRR0 538 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 JMJD4Q9H9V9 463 aa16.91■□□□□ 0.3
CLN3-249ENST00000636685 ZNF215Q9UL58 517 aaPredicted RBP16.91■□□□□ 0.3
CLN3-249ENST00000636685 ZFHX4Q86UP3 3567 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 OTOGLQ3ZCN5 2332 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 FSD2A1L4K1 749 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 FSCN2O14926 492 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 PI15O43692 258 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 SRGAP2BP0DMP2 458 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 CCND2P30279 289 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 HAND2P61296 217 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 GHRHRQ02643 423 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 APOBRQ0VD83 1088 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 ANGPT1Q15389 498 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 ALX1Q15699 326 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 SPOUT1Q5T280 376 aaKnown RBP16.9■□□□□ 0.3
CLN3-249ENST00000636685 TAF2Q6P1X5 1199 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 DNAJB3Q8WWF6 145 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 POMKQ9H5K3 350 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 PCDHB12Q9Y5F1 795 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 NRCAMQ92823 1304 aa16.9■□□□□ 0.3
CLN3-249ENST00000636685 FGF18O76093 207 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 FGAP02671 866 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 STAG3L1P0CL83 205 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 MS4A1P11836 297 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 SP4Q02446 784 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 PUM1Q14671 1186 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLN3-249ENST00000636685 PLPP4Q5VZY2 271 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 METTL7BQ6UX53 244 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 RSPH3Q86UC2 560 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 MIER1Q8N108 512 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 PI4K2BQ8TCG2 481 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 HCSTQ9UBK5 93 aa16.89■□□□□ 0.29
CLN3-249ENST00000636685 MAP1BP46821 2468 aaKnown RBP16.88■□□□□ 0.29
CLN3-249ENST00000636685 FRYLO94915 3013 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 SCG2P13521 617 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 SEMA3FQ13275 785 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 CCDC105Q8IYK2 499 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 PNMA1Q8ND90 353 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 TMEM260Q9NX78 707 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 LRFN2Q9ULH4 789 aa16.88■□□□□ 0.29
CLN3-249ENST00000636685 LMNAP02545 664 aaKnown RBP16.87■□□□□ 0.29
CLN3-249ENST00000636685 HOXB8P17481 243 aaPredicted RBP16.87■□□□□ 0.29
CLN3-249ENST00000636685 MRPS6P82932 125 aaKnown RBP16.87■□□□□ 0.29
CLN3-249ENST00000636685 PPFIA1Q13136 1202 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 NEDD9Q14511 834 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 FCHSD1Q86WN1 690 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 THNSL1Q8IYQ7 743 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 RASGRP4Q8TDF6 673 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 ZBTB10Q96DT7 871 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 AMNQ9BXJ7 453 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 FTHL17Q9BXU8 183 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 LIMD1Q9UGP4 676 aa16.87■□□□□ 0.29
CLN3-249ENST00000636685 HIDE1A8MVS5 230 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 PPP1R11O60927 126 aaPredicted RBP16.86■□□□□ 0.29
CLN3-249ENST00000636685 WEE2P0C1S8 567 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 NPR3P17342 541 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 AOC1P19801 751 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 MRPS9P82933 396 aaKnown RBP16.86■□□□□ 0.29
CLN3-249ENST00000636685 GRIK4Q16099 956 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 ASPRV1Q53RT3 343 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 PDE12Q6L8Q7 609 aaKnown RBP16.86■□□□□ 0.29
CLN3-249ENST00000636685 MFSD6Q6ZSS7 791 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 DGKHQ86XP1 1220 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 TBC1D10CQ8IV04 446 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 DTWD2Q8NBA8 298 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 OTUD7AQ8TE49 926 aaPredicted RBP16.86■□□□□ 0.29
CLN3-249ENST00000636685 AAASQ9NRG9 546 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 TUBE1Q9UJT0 475 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 PADI3Q9ULW8 664 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 BAZ2BQ9UIF8 2168 aaKnown RBP16.86■□□□□ 0.29
CLN3-249ENST00000636685 TTC41PQ6P2S7 1318 aa16.86■□□□□ 0.29
CLN3-249ENST00000636685 TBKBP1A7MCY6 615 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 SPATA31C2B4DYI2 1134 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 TMEM62Q0P6H9 643 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 GNPTABQ3T906 1256 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 MARCH8Q5T0T0 291 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 COLGALT1Q8NBJ5 622 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms