RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	ALDH1B1	P30837	517 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	PDE6B	P35913	854 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	TRAPPC10	P48553	1259 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	COPB1	P53618	953 aa	Known RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	PNMA8A	Q86V59	439 aa	Predicted RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	MYLK4	Q86YV6	388 aa	Predicted RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	CFAP61	Q8NHU2	1237 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	FAM163A	Q96GL9	167 aa	Predicted RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	PHF20	Q9BVI0	1012 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	COA1	Q9GZY4	146 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	IQCG	Q9H095	443 aa	Known RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	SH3GLB2	Q9NR46	395 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	DNAAF2	Q9NVR5	837 aa	Known RBP	11.76	□□□□□ -0.53
CHD2-223	ENST00000636306	MYH8	P13535	1937 aa		11.76	□□□□□ -0.53
CHD2-223	ENST00000636306		A0A1W2PQC6	194 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	BTBD18	B2RXH4	712 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	C6orf229	H3BNL8	230 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	FOXN1	O15353	648 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	MYL1	P05976	194 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	TSPY3	P0CV98	308 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	TSPY8	P0CW00	308 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	BTD	P43251	543 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	MEA1	Q16626	185 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	ARMC3	Q5W041	872 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	TBC1D16	Q8TBP0	767 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	NOC3L	Q8WTT2	800 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	FERMT2	Q96AC1	680 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	CHMP6	Q96FZ7	201 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	EYA3	Q99504	573 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	CHP1	Q99653	195 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	SLX1A	Q9BQ83	275 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	VCX	Q9H320	206 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.75	□□□□□ -0.53	3e-6	■■■■□ 20.6
CHD2-223	ENST00000636306	ATXN10	Q9UBB4	475 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	SERTAD1	Q9UHV2	236 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	TSKS	Q9UJT2	592 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	TMCO1	Q9UM00	188 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	PLAA	Q9Y263	795 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	ATP6V0A2	Q9Y487	856 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	GMEB1	Q9Y692	573 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	GAK	O14976	1311 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	TNS1	Q9HBL0	1735 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	C10orf71	Q711Q0	1435 aa		11.75	□□□□□ -0.53
CHD2-223	ENST00000636306	ATP2C2	O75185	946 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	GSTA2	P09210	222 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	SCG2	P13521	617 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	PTPRE	P23469	700 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	GUCY1A2	P33402	732 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	LACTB	P83111	547 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	CDK17	Q00537	523 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	FUT2	Q10981	343 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	KRT31	Q15323	416 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	MFSD14B	Q5SR56	506 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	PIGW	Q7Z7B1	504 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	LCA5	Q86VQ0	697 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	TRIM42	Q8IWZ5	723 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	GBP7	Q8N8V2	638 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	MAIP1	Q8WWC4	291 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	LRRC45	Q96CN5	670 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	IFT74	Q96LB3	600 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	ZNHIT6	Q9NWK9	470 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	CAPN11	Q9UMQ6	739 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	KCNJ14	Q9UNX9	436 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	LUC7L2	Q9Y383	392 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	COL11A2	P13942	1736 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306		F8W031	263 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	USO1	O60763	962 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	GBP1	P32455	592 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	SH3BGR	P55822	239 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	ATP11A	P98196	1134 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	SLC7A5	Q01650	507 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	TFAP4	Q01664	338 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	DEUP1	Q05D60	604 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	KIF5A	Q12840	1032 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	GRM4	Q14833	912 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	GALNT17	Q6IS24	598 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	ANO7	Q6IWH7	933 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	CCDC82	Q8N4S0	544 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	PNMA1	Q8ND90	353 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	FAM129A	Q9BZQ8	928 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	TAOK2	Q9UL54	1235 aa		11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	SRPRB	Q9Y5M8	271 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-223	ENST00000636306	RNF225	M0QZC1	329 aa	Predicted RBP	11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	ACTN4	O43707	911 aa	Known RBP	11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	EVI5	O60447	810 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	PLEKHA8P1	O95397	391 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	ECEL1	O95672	775 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	USP17L8	P0C7I0	530 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	CYP2D6	P10635	497 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	ATP6V1C1	P21283	382 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	HPD	P32754	393 aa	Predicted RBP	11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	ADAM9	Q13443	819 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	MTMR3	Q13615	1198 aa		11.73	□□□□□ -0.53
CHD2-223	ENST00000636306	DIXDC1	Q155Q3	683 aa		11.73	□□□□□ -0.53

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