RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 DPH5Q9H2P9 285 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 MAN1C1Q9NR34 630 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 STRIP2Q9ULQ0 834 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 KIAA1024Q9UPX6 916 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 AOX1Q06278 1338 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 HOXC9P31274 260 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 RBBP7Q16576 425 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 TWF2Q6IBS0 349 aaKnown RBP5.96□□□□□ -1.45
SCN1A-209ENST00000635750 KLC2Q9H0B6 622 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 LCMT1Q9UIC8 334 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 NFU1Q9UMS0 254 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 NBPF26B4DH59 902 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 USP17L12C9JPN9 530 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 USP17L21D6R901 530 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 KDM1AO60341 852 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 MYL1P05976 194 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 DAB2P98082 770 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 OCA2Q04671 838 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 NFX1Q12986 1120 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 ALCAMQ13740 583 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 CCDC85BQ15834 202 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 APPL2Q8NEU8 664 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 OR6B3Q8NGW1 331 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 RAET1EQ8TD07 263 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PPP1R13BQ96KQ4 1090 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 NCOA5Q9HCD5 579 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 ATP10DQ9P241 1426 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 XDHP47989 1333 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 ERVV-2B6SEH9 535 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 FAM196AQ6ZSG2 479 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 MFN1Q8IWA4 741 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 HSPH1Q92598 858 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PLEKHA4Q9H4M7 779 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 SP110Q9HB58 689 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 INTS9Q9NV88 658 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 INPP5FQ9Y2H2 1132 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 MED23Q9ULK4 1368 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 hCG_1642624A0A1W2PR95 340 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 CLRN2A0PK11 232 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 GOLGA8MH3BSY2 632 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 LDHAP00338 332 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 RPN1P04843 607 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 SFSWAPQ12872 951 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PKN3Q6P5Z2 889 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 CATSPER4Q7RTX7 472 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 CRLF3Q8IUI8 442 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PPP1R14AQ96A00 147 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 MYL10Q9BUA6 226 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 SMARCAD1Q9H4L7 1026 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 ECT2Q9H8V3 914 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 MAP10Q9P2G4 905 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 LEMD3Q9Y2U8 911 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 HUS1O60921 280 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 APOA4P06727 396 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 RALAP11233 206 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 GCKP35557 465 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PTGDRQ13258 359 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 CHMP1BQ7LBR1 199 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 GPIHBP1Q8IV16 184 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 EGFL8Q99944 293 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 OSBPL10Q9BXB5 764 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 SARS2Q9NP81 518 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 SNX5Q9Y5X3 404 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PARD3Q8TEW0 1356 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 TOP2BQ02880 1626 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 GOLGA8JA6NMD2 632 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 LRRIQ3A6PVS8 624 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 AFPP02771 609 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 GUCA1AP43080 201 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 MTERF2Q49AM1 385 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 KRT40Q6A162 431 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 ACAD11Q709F0 780 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 NT5DC4Q86YG4 428 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 RTKN2Q8IZC4 609 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 GJA10Q969M2 543 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 DSCC1Q9BVC3 393 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 PAPOLBQ9NRJ5 636 aaKnown RBP5.96□□□□□ -1.46
SCN1A-209ENST00000635750 NDFIP2Q9NV92 336 aa5.96□□□□□ -1.46
SCN1A-209ENST00000635750 K7ERI5 159 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 ORC4O43929 436 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 ALDH1A2O94788 518 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 OSTNP61366 133 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 APBA1Q02410 837 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 SLMAPQ14BN4 828 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 CC2D2BQ6DHV5 1058 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 ARHGEF25Q86VW2 580 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 BEST2Q8NFU1 509 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 LARP4BQ92615 738 aaKnown RBP5.95□□□□□ -1.46
SCN1A-209ENST00000635750 TADA1Q96BN2 335 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 SPATA16Q9BXB7 569 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 DCTPP1Q9H773 170 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 CASS4Q9NQ75 786 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 PALD1Q9ULE6 856 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 G3BP2Q9UN86 482 aaKnown RBP5.95□□□□□ -1.46
SCN1A-209ENST00000635750 CFAP69A5D8W1 941 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 FAM47E-STBD1D6RA91 191 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 ZNF189O75820 626 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-209ENST00000635750 TJP3O95049 919 aa5.95□□□□□ -1.46
SCN1A-209ENST00000635750 ZRANB2O95218 330 aaKnown RBP eCLIP5.95□□□□□ -1.46
SCN1A-209ENST00000635750 CYP4A11Q02928 519 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms