RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SIK3Q9Y2K2 1263 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 HMGCS2P54868 508 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 MRPS9P82933 396 aaKnown RBP24.4■■□□□ 1.5
PNKP-220ENST00000627232 PGM5Q15124 567 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 MEA1Q16626 185 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 CCDC40Q4G0X9 1142 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 SLC30A10Q6XR72 485 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 NELFCDQ8IXH7 590 aa24.4■■□□□ 1.5
PNKP-220ENST00000627232 MYPNQ86TC9 1320 aa24.39■■□□□ 1.5
PNKP-220ENST00000627232 ATP2A1O14983 1001 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 DHX15O43143 795 aaKnown RBP24.39■■□□□ 1.49
PNKP-220ENST00000627232 COG2Q14746 738 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 KNOP1Q1ED39 458 aaKnown RBP24.39■■□□□ 1.49
PNKP-220ENST00000627232 MIER3Q7Z3K6 550 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 ZNF397Q8NF99 534 aaPredicted RBP24.39■■□□□ 1.49
PNKP-220ENST00000627232 PIGOQ8TEQ8 1089 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 ZFP91Q96JP5 570 aaPredicted RBP24.39■■□□□ 1.49
PNKP-220ENST00000627232 PCMTD1Q96MG8 357 aaPredicted RBP24.39■■□□□ 1.49
PNKP-220ENST00000627232 MRPL44Q9H9J2 332 aaKnown RBP24.39■■□□□ 1.49
PNKP-220ENST00000627232 RNF146Q9NTX7 359 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 TBC1D22BQ9NU19 505 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 TMOD4Q9NZQ9 345 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 SEL1LQ9UBV2 794 aa24.39■■□□□ 1.49
PNKP-220ENST00000627232 PDXKO00764 312 aa24.38■■□□□ 1.49
PNKP-220ENST00000627232 CDK17Q00537 523 aa24.38■■□□□ 1.49
PNKP-220ENST00000627232 CATSPERGQ6ZRH7 1159 aa24.38■■□□□ 1.49
PNKP-220ENST00000627232 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.38■■□□□ 1.493e-6■■■■■ 38.3
PNKP-220ENST00000627232 PXMP2Q9NR77 195 aa24.38■■□□□ 1.49
PNKP-220ENST00000627232 ODF2LQ9ULJ1 636 aa24.38■■□□□ 1.49
PNKP-220ENST00000627232 PAPPA2Q9BXP8 1791 aa24.38■■□□□ 1.49
PNKP-220ENST00000627232 CETN3O15182 167 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 NKRFO15226 690 aaKnown RBP eCLIP24.37■■□□□ 1.49
PNKP-220ENST00000627232 EIF3DO15371 548 aaKnown RBP eCLIP24.37■■□□□ 1.49
PNKP-220ENST00000627232 FAM13AO94988 1023 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 CASP5P51878 434 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 SH3D19Q5HYK7 790 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 PDCD2LQ9BRP1 358 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 LXNQ9BS40 222 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 EDEM3Q9BZQ6 932 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 ZNHIT6Q9NWK9 470 aaKnown RBP24.37■■□□□ 1.49
PNKP-220ENST00000627232 FAM184BQ9ULE4 1060 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 AFG3L2Q9Y4W6 797 aa24.37■■□□□ 1.49
PNKP-220ENST00000627232 EPN1Q9Y6I3 576 aaPredicted RBP24.37■■□□□ 1.49
PNKP-220ENST00000627232 LOC285556D6RIA3 1793 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 RSPH10B2B2RC85 870 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 CALUO43852 315 aaPredicted RBP24.36■■□□□ 1.49
PNKP-220ENST00000627232 P4HBP07237 508 aaKnown RBP24.36■■□□□ 1.49
PNKP-220ENST00000627232 RSPH10BP0C881 870 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 KLK7P49862 253 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 ADAM9Q13443 819 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 MTMR1Q13613 665 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 WDR59Q6PJI9 974 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 TRIM59Q8IWR1 403 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 RMDN3Q96TC7 470 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 ADARB2Q9NS39 739 aaKnown RBP24.36■■□□□ 1.49
PNKP-220ENST00000627232 AGPAT5Q9NUQ2 364 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 TYW1Q9NV66 732 aaKnown RBP24.36■■□□□ 1.49
PNKP-220ENST00000627232 UBE4BO95155 1302 aa24.36■■□□□ 1.49
PNKP-220ENST00000627232 USP2O75604 605 aaPredicted RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 SLU7O95391 586 aaKnown RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 EIF2AK2P19525 551 aaKnown RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 GUCY2CP25092 1073 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 HNRNPH3P31942 346 aaKnown RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 ZNF131P52739 623 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 GNG11P61952 73 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 NSMFQ6X4W1 530 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 RBM46Q8TBY0 533 aaKnown RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 WNK4Q96J92 1243 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 CHP1Q99653 195 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 ZSWIM4Q9H7M6 989 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 WRAP73Q9P2S5 460 aaPredicted RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 FZD1Q9UP38 647 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 MYH11P35749 1972 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 NDUFA10O95299 355 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 LYPLA2O95372 231 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 MYBP10242 640 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 CASQ1P31415 396 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 HOXD13P35453 343 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 ITGB3BPQ13352 177 aaPredicted RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 ARHGEF16Q5VV41 709 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 SNRNP48Q6IEG0 339 aaKnown RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 ERO1AQ96HE7 468 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 PARVGQ9HBI0 331 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 ZNF214Q9UL59 606 aaPredicted RBP24.35■■□□□ 1.49
PNKP-220ENST00000627232 RIPK3Q9Y572 518 aa24.35■■□□□ 1.49
PNKP-220ENST00000627232 PPP2R3AQ06190 1150 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 BAATQ14032 418 aaPredicted RBP24.34■■□□□ 1.49
PNKP-220ENST00000627232 NFIL3Q16649 462 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 STXBP4Q6ZWJ1 553 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 FRMD5Q7Z6J6 570 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 CCDC170Q8IYT3 715 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 BANK1Q8NDB2 785 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 ACRBPQ8NEB7 543 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 HOXC10Q9NYD6 342 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 DBR1Q9UK59 544 aaKnown RBP24.34■■□□□ 1.49
PNKP-220ENST00000627232 PTPRFP10586 1907 aa24.34■■□□□ 1.49
PNKP-220ENST00000627232 ARHGEF35A5YM69 484 aa24.33■■□□□ 1.49
PNKP-220ENST00000627232 DDX39AO00148 427 aaKnown RBP24.33■■□□□ 1.49
PNKP-220ENST00000627232 PRPF6O94906 941 aaKnown RBP24.33■■□□□ 1.49
PNKP-220ENST00000627232 GCNT3O95395 438 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms