RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PVALEFA0A1B0GWK0 134 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 LRRD1A4D1F6 860 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 GH2P01242 217 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 SLMAPQ14BN4 828 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 FAM83BQ5T0W9 1011 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 FOXP4Q8IVH2 680 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-212ENST00000616140 GSPT2Q8IYD1 628 aaKnown RBP15.15■□□□□ 0.02
CPSF1-212ENST00000616140 KCNF1Q9H3M0 494 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 HDAC6Q9UBN7 1215 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 HOXA7P31268 230 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-212ENST00000616140 TMED2Q15363 201 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 MTERF2Q49AM1 385 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 HIBCHQ6NVY1 386 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-212ENST00000616140 DNAJC24Q6P3W2 148 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 ARHGEF18Q6ZSZ5 1173 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 SFR1Q86XK3 245 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 RFX6Q8HWS3 928 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 MED10Q9BTT4 135 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 ESYT3A0FGR9 886 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 KCNH2Q12809 1159 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 FAM47CQ5HY64 1035 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 FAM196BA6NMK8 535 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 CASQ2O14958 399 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-212ENST00000616140 ZBTB5O15062 677 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 RPSAP08865 295 aaKnown RBP15.14■□□□□ 0.01
CPSF1-212ENST00000616140 CD58P19256 250 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 GFPT1Q06210 699 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-212ENST00000616140 DNAJC12Q9UKB3 198 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 SNX24Q9Y343 169 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 ACSL3O95573 720 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 FAM160B1Q5W0V3 765 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 E4F1Q66K89 784 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-212ENST00000616140 CDKL2Q92772 493 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 COA1Q9GZY4 146 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 ZMYND12Q9H0C1 365 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 CEP72Q9P209 647 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 GLI2P10070 1586 aa15.14■□□□□ 0.01
CPSF1-212ENST00000616140 POTEB3A0JP26 581 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 A6NJR5 290 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 POTECB2RU33 542 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 KRT1P04264 644 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 CYP19A1P11511 503 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 GCKP35557 465 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 PEX3P56589 373 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 BASP1P80723 227 aaKnown RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 CUL1Q13616 776 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 RINT1Q6NUQ1 792 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 POTEBQ6S5H4 581 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 ARMC9Q7Z3E5 817 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 PROM2Q8N271 834 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 CNOT10Q9H9A5 744 aaKnown RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 CD209Q9NNX6 404 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 TMEM260Q9NX78 707 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 BCAP29Q9UHQ4 241 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 HMGB1P1B2RPK0 211 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 IFRD2Q12894 506 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 FAM133BQ5BKY9 247 aaKnown RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 PDZD4Q76G19 769 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 RHOT2Q8IXI1 618 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 USP42Q9H9J4 1324 aaKnown RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 RPS6KA4O75676 772 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 EIF3BP55884 814 aaKnown RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 RCN2Q14257 317 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 NFRKBQ6P4R8 1299 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 TMEM179Q6ZVK1 233 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 GBP5Q96PP8 586 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 APOL6Q9BWW8 343 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 ZNF609O15014 1411 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 EXOC1LA0A1B0GW35 172 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 ATP2C1P98194 919 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 MAP3K21Q5TCX8 1036 aa15.13■□□□□ 0.01
CPSF1-212ENST00000616140 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.13■□□□□ 0.01
CPSF1-212ENST00000616140 CRB1P82279 1406 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 FAM205CA6NFA0 338 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 MYO1CO00159 1063 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 NR3C1P04150 777 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 CA4P22748 312 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 AP3B2Q13367 1082 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 EEPD1Q7L9B9 569 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 CDHR1Q96JP9 859 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 MXD3Q9BW11 206 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 BARHL2Q9NY43 387 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 PLAAQ9Y263 795 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 CPDO75976 1380 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 CDC42BPAQ5VT25 1732 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 RWDD2BP57060 319 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 OSTNP61366 133 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 KCTD2Q14681 263 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 BBS9Q3SYG4 887 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 GUF1Q8N442 669 aaKnown RBP15.12■□□□□ 0.01
CPSF1-212ENST00000616140 SCYL1Q96KG9 808 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 FBXO2Q9UK22 296 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-212ENST00000616140 PCDHA6Q9UN73 950 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 PCDHA8Q9Y5H6 950 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 GGCXP38435 758 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 BAG6P46379 1132 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 GLE1Q53GS7 698 aaKnown RBP15.12■□□□□ 0.01
CPSF1-212ENST00000616140 NUGGCQ68CJ6 796 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 PDXDC2PQ6P474 469 aa15.12■□□□□ 0.01
CPSF1-212ENST00000616140 SULF1Q8IWU6 871 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms