RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 VIMP08670 466 aaKnown RBP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 FXR1P51114 621 aaKnown RBP eCLIP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 NFIAQ12857 509 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 STK4Q13043 487 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 MTMR2Q13614 643 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 CCDC63Q8NA47 563 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 RETREG2Q8NC44 543 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 MMS19Q96T76 1030 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 PPANQ9NQ55 473 aaKnown RBP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 FAM217BQ9NTX9 383 aaPredicted RBP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 ADAMTS1Q9UHI8 967 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 ZHX2Q9Y6X8 837 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 RGPD1P0DJD0 1748 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 THAP12O43422 761 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 H2AFZP0C0S5 128 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 ACTN1P12814 892 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 NMT1P30419 496 aaKnown RBP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 GABPB1Q06547 395 aaPredicted RBP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 CCDC121Q6ZUS5 278 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 H2AFVQ71UI9 128 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 LXNQ9BS40 222 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 APOL6Q9BWW8 343 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 AGXT2Q9BYV1 514 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 GNGT1P63211 74 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 KCNH2Q12809 1159 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 FAM160B2Q86V87 743 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 FAM204AQ9H8W3 233 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 LARSQ9P2J5 1176 aaKnown RBP9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 ATF7P17544 494 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 MFAP3P55082 362 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 TRIP13Q15645 432 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 SNRNP48Q6IEG0 339 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 TC2NQ8N9U0 490 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 FAM184BQ9ULE4 1060 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 TBC1D8O95759 1140 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 FERP16591 822 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 ZNF365Q70YC5 407 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 TRIM9Q9C026 710 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 MRFAP1Q9Y605 127 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 N4BP1O75113 896 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 HEXIM1O94992 359 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 NDUFB10O96000 172 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 PADI6Q6TGC4 694 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 RAD9BQ6WBX8 426 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 PPP1R21Q6ZMI0 780 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 CCDC170Q8IYT3 715 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 ADSSL1Q8N142 457 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 RPAP3Q9H6T3 665 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 SMARCAL1Q9NZC9 954 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 CEP72Q9P209 647 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 ZNF70Q9UC06 446 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 LMNB1P20700 586 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 ZNF653Q96CK0 615 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 SAAL1Q96ER3 474 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 NSRP1Q9H0G5 558 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 STMN4Q9H169 189 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 LIMA1Q9UHB6 759 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 CD58P19256 250 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 GCLMP48507 274 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 RBM43Q6ZSC3 357 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 RPUSD2Q8IZ73 545 aaKnown RBP9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 PPP1R14CQ8TAE6 165 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 RMDN3Q96TC7 470 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 DNAJC12Q9UKB3 198 aa9.72□□□□□ -0.85
PDLIM5-222ENST00000615540 EBAG9O00559 213 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 STAM2O75886 525 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 TUBBP07437 444 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 TRIM49P0CI25 452 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 TRIM49CP0CI26 452 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 SLURP2P0DP57 97 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 TCP1P17987 556 aaKnown RBP9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 ANKRD42Q8N9B4 389 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 PSMD1Q99460 953 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 REEP2Q9BRK0 252 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 CSPG5O95196 566 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 SRGAP2CP0DJJ0 459 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 KNOP1Q1ED39 458 aaKnown RBP9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 SLC10A5Q5PT55 438 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 STRIP1Q5VSL9 837 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 DENND2CQ68D51 928 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 MSANTD4Q8NCY6 345 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 PCDHAC2Q9Y5I4 1007 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 PDS5AQ29RF7 1337 aaKnown RBP9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 BUB1BO60566 1050 aaPredicted RBP9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 HIP1RO75146 1068 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 GYPCP04921 128 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 PSAPP07602 524 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 ADCY1Q08828 1119 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 CCDC77Q9BR77 488 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 AKT3Q9Y243 479 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 HPSEQ9Y251 543 aa9.71□□□□□ -0.85
PDLIM5-222ENST00000615540 RNF40O75150 1001 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 ECE1P42892 770 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 ZC2HC1CQ53FD0 456 aaPredicted RBP9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 FAM160B1Q5W0V3 765 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 LDHDQ86WU2 507 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 PASD1Q8IV76 773 aa9.71□□□□□ -0.86
PDLIM5-222ENST00000615540 C5P01031 1676 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms