RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 GINS2Q9Y248 185 aa6.48□□□□□ -1.37
CPNE3-208ENST00000614678 MYH9P35579 1960 aaKnown RBP6.47□□□□□ -1.37
CPNE3-208ENST00000614678 LCHNA4D1U4 455 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 CCNT1O60563 726 aaKnown RBP6.47□□□□□ -1.37
CPNE3-208ENST00000614678 CDC25AP30304 524 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 THPOP40225 353 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 ABHD15Q6UXT9 468 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 TMEM40Q8WWA1 233 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 RNPC3Q96LT9 517 aaKnown RBP6.47□□□□□ -1.37
CPNE3-208ENST00000614678 POLR3EQ9NVU0 708 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 RGL1Q9NZL6 768 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 NOD1Q9Y239 953 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 YBX2Q9Y2T7 364 aaKnown RBP6.47□□□□□ -1.37
CPNE3-208ENST00000614678 CHRNA1P02708 482 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 NEDD9Q14511 834 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 PLA2G4FQ68DD2 849 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 PPP1R18Q6NYC8 613 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 NFRKBQ6P4R8 1299 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 NLRX1Q86UT6 975 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 ETNPPLQ8TBG4 499 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 MPHOSPH6Q99547 160 aaKnown RBP6.47□□□□□ -1.37
CPNE3-208ENST00000614678 LOC102724159A0A0B4J2E5 919 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 ZEB2O60315 1214 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 CSPG5O95196 566 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 MMP1P03956 469 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 AP3B2Q13367 1082 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 PWP2Q15269 919 aaKnown RBP6.47□□□□□ -1.37
CPNE3-208ENST00000614678 LRRC71Q8N4P6 559 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 SEPT1Q8WYJ6 367 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 SENP7Q9BQF6 1050 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 GABBR1Q9UBS5 961 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 TTC28Q96AY4 2481 aa6.47□□□□□ -1.37
CPNE3-208ENST00000614678 BACH1O14867 736 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 CYP3A4P08684 503 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 FGFR4P22455 802 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 GNA11P29992 359 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 TOB1P50616 345 aaPredicted RBP6.46□□□□□ -1.37
CPNE3-208ENST00000614678 CYP4A11Q02928 519 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 ZNF174Q15697 407 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 FOXD4L5Q5VV16 416 aaPredicted RBP6.46□□□□□ -1.37
CPNE3-208ENST00000614678 FOXD4L4Q8WXT5 416 aaPredicted RBP6.46□□□□□ -1.37
CPNE3-208ENST00000614678 PBX4Q9BYU1 374 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 AGO3Q9H9G7 860 aaKnown RBP6.46□□□□□ -1.37
CPNE3-208ENST00000614678 SAMM50Q9Y512 469 aa6.46□□□□□ -1.37
CPNE3-208ENST00000614678 EPOPA6NHQ4 379 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 POTEMA6NI47 508 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 ZBBXA8MT70 800 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 PSMD10O75832 226 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 HOXC8P31273 242 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 BMP8BP34820 402 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 NPEPPSP55786 919 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 GRIK4Q16099 956 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 FERMT3Q86UX7 667 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 KSR1Q8IVT5 923 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 DBF4BQ8NFT6 615 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 HCSTQ9UBK5 93 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 DDX25Q9UHL0 483 aaKnown RBP6.46□□□□□ -1.38
CPNE3-208ENST00000614678 TRPC6Q9Y210 931 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 C17orf102A2RUQ5 167 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 PP2D1A8MPX8 630 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 B4DLN1 442 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 CABYRO75952 493 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 VTNP04004 478 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 GHRP10912 638 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 GJB2P29033 226 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 CIITAP33076 1130 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 MCM7P33993 719 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 STAT5BP51692 787 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 CLCN3P51790 818 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 PKP1Q13835 747 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 SERINC5Q86VE9 423 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 DEFB123Q8N688 67 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 MTUS1Q9ULD2 1270 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 TANC1Q9C0D5 1861 aa6.46□□□□□ -1.38
CPNE3-208ENST00000614678 LGR5O75473 907 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 STBD1O95210 358 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 ATG7O95352 703 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 FOSP01100 380 aaPredicted RBP6.45□□□□□ -1.38
CPNE3-208ENST00000614678 PPFIA1Q13136 1202 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 MKRN4PQ13434 485 aaPredicted RBP6.45□□□□□ -1.38
CPNE3-208ENST00000614678 GRIN2CQ14957 1233 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 NONOQ15233 471 aaKnown RBP eCLIP6.45□□□□□ -1.38
CPNE3-208ENST00000614678 IL17AQ16552 155 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 ECM1Q16610 540 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 GUCD1Q96NT3 240 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 SH3GLB2Q9NR46 395 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 VAV3Q9UKW4 847 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 USP20Q9Y2K6 914 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 STK36Q9NRP7 1315 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 IGKV6D-21A0A0A0MT36 114 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 SUPT20HL2P0C7V6 817 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 SPIRE1Q08AE8 756 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 CTTNQ14247 550 aaKnown RBP6.45□□□□□ -1.38
CPNE3-208ENST00000614678 ANKRD1Q15327 319 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 FOXD4L6Q3SYB3 417 aaPredicted RBP6.45□□□□□ -1.38
CPNE3-208ENST00000614678 LONRF3Q496Y0 759 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 LRCH2Q5VUJ6 765 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 PDXDC2PQ6P474 469 aa6.45□□□□□ -1.38
CPNE3-208ENST00000614678 FOXD4L3Q6VB84 417 aaPredicted RBP6.45□□□□□ -1.38
CPNE3-208ENST00000614678 LRRC8DQ7L1W4 858 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms